fritzsedlazeck / parliament2Links
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
☆48Updated 5 years ago
Alternatives and similar repositories for parliament2
Users that are interested in parliament2 are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- ☆83Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- ☆44Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆31Updated last month
- python plotly Circos from VCF☆40Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆111Updated last month
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Structural variant merging tool☆55Updated last year
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- Structural Variant Index☆75Updated 11 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- ☆50Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Structural variant caller for real-time long-read sequencing data☆58Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- Pore-C support☆53Updated 2 years ago