fritzsedlazeck / parliament2Links
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
☆48Updated 5 years ago
Alternatives and similar repositories for parliament2
Users that are interested in parliament2 are comparing it to the libraries listed below
Sorting:
- ☆44Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated 2 weeks ago
- Structural variant merging tool☆55Updated last year
- ☆32Updated last week
- ☆81Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- ☆30Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆22Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- MEGAnE☆33Updated 2 years ago
- Structural Variant Index☆75Updated 9 months ago
- ☆21Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 2 months ago
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago