fritzsedlazeck / parliament2Links
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
☆47Updated 5 years ago
Alternatives and similar repositories for parliament2
Users that are interested in parliament2 are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- ☆40Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- ☆21Updated 3 years ago
- ☆80Updated 3 months ago
- ☆22Updated 4 years ago
- Structural variant merging tool☆49Updated 9 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Structural Variant Index☆74Updated 5 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Variant annotation and merging pipeline☆34Updated this week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆41Updated last month
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago