HKU-BAL / ClairLinks
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆105Updated 3 years ago
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below
Sorting:
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆161Updated 11 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆131Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Long read aligner☆115Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- ☆126Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- Structural Variant Identification Method using Long Reads☆181Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- SV caller for nanopore data☆92Updated 5 years ago
- Graph realignment tools for structural variants☆165Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Updated 2 years ago
- Yet another k-mer analyzer☆157Updated last month
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 2 weeks ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 4 years ago
- ☆121Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago