HKU-BAL / Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆104Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Clair
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- Research release basecalling models and configurations☆103Updated 5 months ago
- Long read aligner☆113Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads☆111Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆105Updated 2 weeks ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆110Updated 2 months ago
- Structural Variant Identification Method using Long Reads☆155Updated 3 years ago
- Variant calling tool for long-read sequencing data☆101Updated this week
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Pangenome-based genome inference☆114Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- Detecting genome structural variants with deep learning in single molecule sequencing☆101Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆93Updated last month
- Nanopore data assembler☆135Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 6 months ago
- Constructing a pangenome gene graph☆174Updated 4 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆89Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆246Updated this week
- Yet another k-mer analyzer☆115Updated 7 months ago
- ☆102Updated 2 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago