HKU-BAL / ClairLinks
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆102Updated 2 years ago
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below
Sorting:
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆134Updated last month
- Research release basecalling models and configurations☆111Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆112Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Phased assembly variant caller☆116Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆104Updated this week
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆93Updated 9 months ago
- SV caller for nanopore data☆91Updated 5 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Pangenome-based genome inference☆127Updated last month
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆103Updated last month
- Structural Variant Identification Method using Long Reads☆172Updated 3 years ago
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- Long read aligner☆115Updated 2 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- software tools for haplotype assembly from sequence data☆218Updated 3 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Detecting genome structural variants with deep learning in single molecule sequencing☆110Updated last month
- A complete diploid human genome☆120Updated 4 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week