HKU-BAL / Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆103Updated 2 years ago
Alternatives and similar repositories for Clair:
Users that are interested in Clair are comparing it to the libraries listed below
- Research release basecalling models and configurations☆104Updated 7 months ago
- A tool for somatic structural variant calling using long reads☆108Updated this week
- ☆107Updated this week
- Pangenome-based genome inference☆121Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- Jasmine: SV Merging Across Samples☆190Updated 3 weeks ago
- Yet another k-mer analyzer☆125Updated 9 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆131Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆78Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆102Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 6 months ago
- Variant calling tool for long-read sequencing data☆102Updated 2 months ago
- Constructing a pangenome gene graph☆178Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Analysis components from Oxford Nanopore Research☆93Updated 4 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last month
- Long read aligner☆114Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 8 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- Structural Variant Identification Method using Long Reads☆156Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆78Updated 9 months ago
- Collection of tools for the analysis of CpG data☆75Updated 10 months ago
- Nanopore data assembler☆140Updated 2 years ago
- Phased assembly variant caller☆107Updated last month