Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆106Sep 1, 2022Updated 4 years ago
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆172Dec 26, 2023Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆394Oct 5, 2026Updated last week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆85Mar 3, 2025Updated last year
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 7 months ago
- ☆35Feb 20, 2020Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- ☆291Dec 29, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Long read based human genomic structural variation detection with cuteSV☆295Updated this week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆530May 20, 2026Updated 4 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆432Oct 9, 2026Updated last week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Long read / genome alignment software☆332Dec 16, 2025Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated last month
- Long read aligner☆115May 26, 2023Updated 3 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Structural Variant Identification Method using Long Reads☆188Jun 29, 2021Updated 5 years ago
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 2 weeks ago
- ☆16Jan 10, 2022Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago