Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆105Sep 1, 2022Updated 3 years ago
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Dec 26, 2023Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆363May 4, 2026Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆84Mar 3, 2025Updated last year
- Structural variation caller using third generation sequencing☆658May 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- ☆286Dec 29, 2025Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Long read based human genomic structural variation detection with cuteSV☆287Mar 26, 2026Updated 2 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Sequence correction provided by ONT Research☆515May 20, 2026Updated last week
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆417Dec 31, 2025Updated 4 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 3 months ago
- ☆46Jun 21, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆411May 22, 2026Updated last week
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆240Dec 29, 2023Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago