HKU-BAL / ClairLinks
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
☆105Updated 3 years ago
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below
Sorting:
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- Variant calling tool for long-read sequencing data☆112Updated 6 months ago
- A tool for somatic structural variant calling using long reads☆146Updated last week
- ☆119Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆127Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 7 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆116Updated 2 years ago
- A complete diploid human genome☆134Updated 2 weeks ago
- Long read aligner☆115Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆135Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Graph realignment tools for structural variants☆162Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆175Updated 4 years ago
- Jasmine: SV Merging Across Samples☆227Updated 9 months ago
- ☆117Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- Fast and accurate coordinate conversion between assemblies☆116Updated this week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month