Structural variant VCF annotation, duplicate removal and comparison
☆36Oct 14, 2025Updated 4 months ago
Alternatives and similar repositories for sansa
Users that are interested in sansa are comparing it to the libraries listed below
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆39Dec 15, 2025Updated 2 months ago
- Workflow for Sequenza, cellularity and ploidy☆26Aug 19, 2025Updated 6 months ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- structural variant database software☆47Feb 16, 2026Updated 2 weeks ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Oct 9, 2025Updated 4 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- A tool for somatic structural variant calling using long reads☆162Oct 20, 2025Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Feb 21, 2026Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 3 months ago
- ☆44Sep 10, 2024Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Jan 23, 2026Updated last month
- BAM Statistics, Feature Counting and Annotation☆152Feb 12, 2026Updated 2 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 4 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated last month
- Population-wide Deletion Calling☆35Apr 16, 2025Updated 10 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Feb 11, 2026Updated 2 weeks ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago