Structural variant VCF annotation, duplicate removal and comparison
☆37Oct 14, 2025Updated 6 months ago
Alternatives and similar repositories for sansa
Users that are interested in sansa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 10 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 2 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 8 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆250Dec 20, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆169Apr 9, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 4 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆41Apr 22, 2026Updated last week
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- structural variant database software☆48Apr 21, 2026Updated last week
- ☆13Jan 23, 2020Updated 6 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 3 months ago
- ☆44Sep 10, 2024Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Dec 14, 2020Updated 5 years ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- vembrane filters VCF records using python expressions☆69Apr 13, 2026Updated 2 weeks ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 3 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 5 months ago
- ☆16Jan 15, 2025Updated last year
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for generating RNAseq-based cancer patient reports☆12Apr 15, 2026Updated 2 weeks ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆124Oct 9, 2025Updated 6 months ago
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated last month
- BAM Statistics, Feature Counting and Annotation☆154Apr 16, 2026Updated 2 weeks ago