llecompte / SVJediLinks
SV genotyping with long reads
☆40Updated 2 years ago
Alternatives and similar repositories for SVJedi
Users that are interested in SVJedi are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆83Updated 9 months ago
- Structural variant caller☆55Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆49Updated last year
- ☆36Updated last year
- ☆31Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Variant annotation and merging pipeline☆41Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- ☆31Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆78Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 weeks ago
- ☆44Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago