llecompte / SVJediLinks
SV genotyping with long reads
☆40Updated 2 years ago
Alternatives and similar repositories for SVJedi
Users that are interested in SVJedi are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆50Updated last year
- ☆83Updated 9 months ago
- Structural variant caller☆55Updated 4 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- ☆36Updated last year
- ☆32Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆31Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- ☆78Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago