llecompte / SVJediLinks
SV genotyping with long reads
☆40Updated 2 years ago
Alternatives and similar repositories for SVJedi
Users that are interested in SVJedi are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆49Updated last year
- ☆31Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- ☆81Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆36Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- ☆43Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆79Updated 5 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- ☆51Updated 6 years ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago