Support Vector Structural Variation Genotyper
☆59May 29, 2020Updated 6 years ago
Alternatives and similar repositories for SV2
Users that are interested in SV2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- ☆51Aug 27, 2019Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.☆15Jun 14, 2025Updated last year
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- ☆13May 2, 2018Updated 8 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆89Apr 1, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago