Comprehensive benchmark of structural variant callers
☆48Feb 4, 2021Updated 5 years ago
Alternatives and similar repositories for sv_benchmark
Users that are interested in sv_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- ☆13May 2, 2018Updated 7 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- ☆51Aug 27, 2019Updated 6 years ago
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- ☆11Sep 23, 2022Updated 3 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Detection and genotyping of structural variants☆20Oct 17, 2025Updated 5 months ago
- ☆31Nov 25, 2019Updated 6 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Aug 7, 2023Updated 2 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Apr 22, 2019Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 8 months ago
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- ☆26Aug 10, 2021Updated 4 years ago