PapenfussLab / sv_benchmarkLinks
Comprehensive benchmark of structural variant callers
☆48Updated 4 years ago
Alternatives and similar repositories for sv_benchmark
Users that are interested in sv_benchmark are comparing it to the libraries listed below
Sorting:
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Structural variant merging tool☆57Updated last year
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- ☆51Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- CN-Learn☆30Updated 5 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- A collection of command line tools for working with sequencing data☆52Updated last week
- ☆54Updated 2 years ago