Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
☆45Jan 26, 2022Updated 4 years ago
Alternatives and similar repositories for genome-data-integration
Users that are interested in genome-data-integration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 7 months ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆210Mar 19, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- VarIant SimulatOR for short, long and linked reads☆53Oct 21, 2024Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- ☆15Aug 1, 2021Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- Data from the Human PanGenomics Project☆61Jul 15, 2021Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Haplotype VCF comparison tools☆460Dec 7, 2023Updated 2 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆264Nov 30, 2023Updated 2 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Jul 22, 2023Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 10 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detect novel (and reference) STR expansions from short-read data☆70Dec 6, 2025Updated 3 months ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- A complete diploid human genome☆145Mar 9, 2026Updated 2 weeks ago
- Structural variant toolkit for VCFs☆401Updated this week
- ☆15Aug 22, 2023Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 11 months ago