WGLab / RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
☆34Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for RepeatHMM
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- ☆45Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- Structural variant caller☆54Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆41Updated 7 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- ☆79Updated 6 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆47Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- ☆22Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆48Updated 2 years ago
- ☆29Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- ☆33Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated last year
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆71Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago