WGLab / RepeatHMMLinks
a hidden Markov model to infer simple repeats from genome sequences
☆37Updated 4 years ago
Alternatives and similar repositories for RepeatHMM
Users that are interested in RepeatHMM are comparing it to the libraries listed below
Sorting:
- ☆48Updated last year
- Structural variant caller☆54Updated 3 years ago
- ☆81Updated 5 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 8 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆49Updated 9 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated this week
- Specifications for PacBio® native file formats☆30Updated 8 months ago
- ☆35Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 9 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- SV genotyping with long reads☆39Updated 2 years ago
- ☆31Updated 11 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago