WGLab / RepeatHMMLinks
a hidden Markov model to infer simple repeats from genome sequences
☆37Updated 4 years ago
Alternatives and similar repositories for RepeatHMM
Users that are interested in RepeatHMM are comparing it to the libraries listed below
Sorting:
- Structural variant caller☆55Updated 3 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆46Updated 9 months ago
- ☆81Updated 6 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- ☆48Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 10 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆36Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆77Updated 5 years ago
- ☆49Updated 10 months ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- ☆32Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last week
- SV genotyping with long reads☆39Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year