Alternatives and similar repositories for polyploid:

Users that are interested in polyploid are comparing it to the libraries listed below

• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 6 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 6 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• zeeev / DASVC
  De-novo Assembly Structural Variant Caller
  ☆13Updated 8 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆10Updated 5 months ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 7 months ago
• mcfrith / dnarrange
  ☆16Updated 3 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 10 months ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year
• hitbc / gcSV
  ☆17Updated last month
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 4 months ago
• collaborativebioinformatics / nibSV
  ☆9Updated 3 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆29Updated 2 weeks ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• daewoooo / SaaRclust
  ☆10Updated last month
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 weeks ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 11 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 8 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago