DecodeGenetics / LRS_SV_setsLinks
VCF files of SVs using long-read sequencing (LRS).
☆22Updated 3 years ago
Alternatives and similar repositories for LRS_SV_sets
Users that are interested in LRS_SV_sets are comparing it to the libraries listed below
Sorting:
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆13Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- ☆20Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆16Updated 8 months ago
- ☆35Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- Sample Contamination Estimate from VCF☆21Updated 10 months ago
- Evaluation of phasing performance☆23Updated 7 years ago
- ☆11Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- ☆51Updated 6 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆19Updated 3 weeks ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- This is the Haplotypo repository☆20Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago