DecodeGenetics / LRS_SV_setsLinks
VCF files of SVs using long-read sequencing (LRS).
☆22Updated 3 years ago
Alternatives and similar repositories for LRS_SV_sets
Users that are interested in LRS_SV_sets are comparing it to the libraries listed below
Sorting:
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆16Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆13Updated 3 years ago
- Sample Contamination Estimate from VCF☆21Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆20Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- ☆33Updated 3 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆11Updated 2 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last week
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago