CompSynBioLab-KoreaUniv / FunGAPLinks
FunGAP: fungal Genome Annotation Pipeline
☆111Updated 4 months ago
Alternatives and similar repositories for FunGAP
Users that are interested in FunGAP are comparing it to the libraries listed below
Sorting:
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- Development version of Easyfig☆100Updated last year
- Download files from NCBI Entrez by accession☆129Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- List of genome assembly tools☆78Updated last week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆156Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆152Updated last week
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆28Updated 8 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆158Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆185Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last week
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆162Updated 2 months ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- A robust, extensible metagenomics pipeline☆174Updated last week
- Bioinformatics tool for Locus Visualisation☆124Updated 4 months ago
- Metagenomic classification of long-read sequencing data☆95Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆130Updated 11 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆194Updated 2 weeks ago
- Long-read mock community experiments☆105Updated 4 years ago