Alternatives and similar repositories for FunGAP

Users that are interested in FunGAP are comparing it to the libraries listed below

• mjsull / Easyfig
  Development version of Easyfig
  ☆93Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆80Updated 2 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆119Updated last year
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆123Updated 8 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆94Updated last month
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆94Updated 10 months ago
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 4 years ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆133Updated last month
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆131Updated 3 weeks ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆138Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆114Updated 2 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆149Updated 2 months ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆127Updated last week
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆73Updated 2 years ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆145Updated last month
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆57Updated last year
• jtlovell / GENESPACE
  ☆207Updated 3 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆132Updated 10 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆97Updated last year
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated last week
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆223Updated 2 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆122Updated 6 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆146Updated last week
• AstrobioMike / bit
  Bioinformatics Tools
  ☆87Updated last month
• wdecoster / chopper
  ☆189Updated 3 weeks ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆131Updated 3 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆65Updated last week