FunGAP: fungal Genome Annotation Pipeline
☆113Jun 8, 2025Updated 10 months ago
Alternatives and similar repositories for FunGAP
Users that are interested in FunGAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Eukaryotic Genome Annotation Pipeline☆386Apr 8, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆458Apr 12, 2026Updated 2 weeks ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- Effector prediction pipeline based on protein properties.☆15Jul 18, 2025Updated 9 months ago
- Genome annotation with AUGUSTUS☆330Aug 15, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- ☆19Dec 7, 2020Updated 5 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆216Jul 1, 2025Updated 9 months ago
- A tool to circularize genome assemblies☆254Apr 6, 2024Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Gene prediction software☆70Oct 22, 2022Updated 3 years ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Support scripts for the visualisation of pangenome analyses in Graphia☆21Oct 7, 2024Updated last year
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- ☆273Jun 26, 2025Updated 10 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆75Dec 22, 2025Updated 4 months ago
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 11 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆901Apr 2, 2026Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆570Apr 13, 2026Updated 2 weeks ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆85Apr 10, 2026Updated 2 weeks ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆77Dec 5, 2023Updated 2 years ago
- antiSMASH☆255Mar 24, 2026Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆375Feb 9, 2026Updated 2 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 2 months ago
- FUNGuild: parsing OTUs into functional guilds☆130Apr 26, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆318Apr 8, 2024Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 5 months ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- Genome Assembly and Annotation Service code☆219Feb 27, 2026Updated 2 months ago