mahesh-panchal / nf-cascade
A proof of concept daisy-chaining Nextflow workflows
☆17Updated last month
Alternatives and similar repositories for nf-cascade:
Users that are interested in nf-cascade are comparing it to the libraries listed below
- Params validation plugin for Nextflow pipelines☆48Updated 6 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 weeks ago
- A nextflow variant benchmarking pipeline - premature☆14Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 6 months ago
- [WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.☆18Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆20Updated 3 months ago
- A catalogue of available long read sequencing data analysis tools☆75Updated last month
- ☆35Updated last year
- Experimental features for Nextflow☆38Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 2 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆14Updated 3 weeks ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆20Updated this week
- vembrane filters VCF records using python expressions☆58Updated 4 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated last week
- ☆35Updated 2 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last month
- A VSCode extension pack for nf-core developers.☆14Updated 4 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated 4 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 2 months ago
- python plotly Circos from VCF☆31Updated 7 months ago
- Snakemake workflow management system and CLI generation tool☆52Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆36Updated 3 weeks ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆14Updated 2 months ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆25Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆14Updated 5 months ago
- A template repository for snakemake workflows.☆38Updated 2 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆26Updated this week
- Creating alignment plots from bam files☆56Updated 3 weeks ago