Alternatives and similar repositories for nf-cascade

Users that are interested in nf-cascade are comparing it to the libraries listed below

• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆22Updated 2 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆56Updated last year
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated last year
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆106Updated last month
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆48Updated last month
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated last month
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 10 months ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆101Updated 6 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated last month
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆85Updated 3 weeks ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆50Updated this week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 6 months ago
• johnmcculloch / JAMS_BW
  Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)
  ☆26Updated this week
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated last year
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆126Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated 2 months ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆33Updated 7 months ago
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆40Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆81Updated last week
• epi2me-labs / wf-basecalling
  ☆48Updated last month
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• Juke34 / AliNe
  Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease
  ☆21Updated 7 months ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last week
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago