Alternatives and similar repositories for nf-cascade

Users that are interested in nf-cascade are comparing it to the libraries listed below

• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 6 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 11 months ago
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆21Updated this week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 4 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆52Updated 8 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆44Updated 3 weeks ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆61Updated 10 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆119Updated 6 months ago
• epi2me-labs / wf-basecalling
  ☆42Updated this week
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆31Updated 2 months ago
• nextflow-io / nf-co2footprint
  [WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.
  ☆20Updated last week
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 8 months ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆41Updated this week
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆50Updated last month
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆99Updated last week
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆17Updated 3 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆76Updated last week
• eclarke / swga
  Select primer sets for selective whole genome amplification (SWGA)
  ☆32Updated 6 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 5 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 3 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• nickp60 / fcid
  ☆21Updated last month
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• nf-core / createtaxdb
  Parallelised and automated construction of metagenomic classifier databases of different tools
  ☆14Updated 3 weeks ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 6 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• epi2me-labs / wf-template
  Nextflow workflow template repository
  ☆17Updated this week
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆78Updated 11 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆106Updated 5 years ago