UMCUGenetics / NextflowModulesLinks
UMCU Genetics Nextflow modules
☆30Updated last year
Alternatives and similar repositories for NextflowModules
Users that are interested in NextflowModules are comparing it to the libraries listed below
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- ☆23Updated 2 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Customer workshop materials☆19Updated 2 years ago
- k-mer similarity analysis pipeline☆22Updated 2 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆18Updated 3 weeks ago