UMCU Genetics Nextflow modules
☆30Oct 25, 2024Updated 2 years ago
Alternatives and similar repositories for NextflowModules
Users that are interested in NextflowModules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 5, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 3 years ago
- Example Nextflow pipelines and programming techniques☆110May 20, 2026Updated 5 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 5 months ago
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- A flexible Nextflow-based framework for the definition of sequencing data processing pipelines☆44May 19, 2026Updated 5 months ago
- a quality control tool for bacterial ONT-only assemblies☆18Oct 19, 2026Updated last week
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A curated collection of Nextflow implementation patterns☆374Nov 21, 2023Updated 2 years ago
- Nextflow training material☆276Oct 20, 2026Updated last week
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 3 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆44Sep 8, 2025Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated last month
- A collection of modules and sub-workflows for Nextflow☆29Feb 13, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 10 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- ☆10May 17, 2017Updated 9 years ago
- List of IARC bioinformatics pipelines and resources☆58Apr 23, 2026Updated 6 months ago
- ☆10Oct 18, 2021Updated 5 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Batch Effects Quality Control Software☆11Sep 14, 2026Updated last month
- A tool to genotype CYP2D6 with WGS data☆62Oct 14, 2023Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆44Mar 31, 2022Updated 4 years ago
- Nextflow language support for Visual Studio Editor☆38Oct 22, 2026Updated last week