BioContainers / multi-package-containersLinks
Testing building mulled containers for multi-requirement tools.
☆83Updated this week
Alternatives and similar repositories for multi-package-containers
Users that are interested in multi-package-containers are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Reference genome resource manager☆74Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last month
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- Galaxy RNA workbench☆41Updated 5 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Experimental features for Nextflow☆48Updated last month
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Efficiently read and write sequencing data from Python☆69Updated 3 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆101Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 6 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated this week
- BigWig and BAM utilities☆102Updated last year
- TIDDIT - structural variant calling☆78Updated last month
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 11 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 8 months ago
- gatk4 RNA variant calling pipeline☆59Updated 2 weeks ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- My bioinfo toolbox☆50Updated last year
- Simple test framework for Nextflow pipelines☆174Updated 2 weeks ago
- Nextflow runs monitoring and organisation UI☆77Updated last year
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Updated last month
- ☆82Updated 3 years ago