Alternatives and similar repositories for multi-package-containers

Users that are interested in multi-package-containers are comparing it to the libraries listed below

• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆41Updated 3 weeks ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆73Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 9 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 2 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆30Updated 2 weeks ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 4 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 3 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated this week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 3 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated last month
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• mahesh-panchal / nf-cascade
  A proof of concept daisy-chaining Nextflow workflows
  ☆25Updated 3 weeks ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 7 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 2 months ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated 2 weeks ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 5 months ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆37Updated 10 months ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆96Updated 2 months ago
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆47Updated last month
• ash9nov / CNV-calling-from-Target-panel-based-NGS-data
  Detection of CNVs (deletion/duplication) in target panel based NGS data
  ☆16Updated 2 years ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆83Updated 7 months ago
• epi2me-labs / wf-basecalling
  ☆39Updated 3 weeks ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 5 months ago