BioContainers / multi-package-containersLinks
Testing building mulled containers for multi-requirement tools.
☆80Updated this week
Alternatives and similar repositories for multi-package-containers
Users that are interested in multi-package-containers are comparing it to the libraries listed below
Sorting:
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Reference genome resource manager☆74Updated last year
- ☆30Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 9 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 8 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- Efficiently read and write sequencing data from Python☆67Updated last month
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Demultiplexing pipeline for sequencing data☆51Updated 2 weeks ago
- Experimental features for Nextflow☆45Updated last month
- TIDDIT - structural variant calling☆76Updated 5 months ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆45Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 3 weeks ago
- BigWig and BAM utilities☆97Updated last year
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Galaxy RNA workbench☆40Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- A C library for handling bigWig files☆81Updated 8 months ago
- vembrane filters VCF records using python expressions☆64Updated last week
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 8 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- ☆95Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago