BioContainers / multi-package-containersLinks
Testing building mulled containers for multi-requirement tools.
☆83Updated this week
Alternatives and similar repositories for multi-package-containers
Users that are interested in multi-package-containers are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Reference genome resource manager☆74Updated last month
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 3 weeks ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Galaxy RNA workbench☆41Updated 5 years ago
- Efficiently read and write sequencing data from Python☆69Updated 3 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- Demultiplexing pipeline for sequencing data☆52Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated this week
- Experimental features for Nextflow☆48Updated last month
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 6 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆100Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆30Updated 5 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated last week
- Demonstrating best practices for bioinformatics command line tools☆117Updated 5 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Nextflow runs monitoring and organisation UI☆77Updated last year
- gatk4 RNA variant calling pipeline☆59Updated last week
- My bioinfo toolbox☆50Updated 11 months ago
- TIDDIT - structural variant calling☆78Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 2 months ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year