BioContainers / multi-package-containersLinks
Testing building mulled containers for multi-requirement tools.
☆76Updated this week
Alternatives and similar repositories for multi-package-containers
Users that are interested in multi-package-containers are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Experimental features for Nextflow☆43Updated last week
- ☆30Updated 2 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 9 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 8 months ago
- Reference genome resource manager☆75Updated last year
- Simple test framework for Nextflow pipelines☆168Updated 2 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated this week
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 3 months ago
- Efficiently read and write sequencing data from Python☆66Updated 3 months ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated last year
- gatk4 RNA variant calling pipeline☆52Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆26Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated last year
- Demultiplexing pipeline for sequencing data☆50Updated 3 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 3 weeks ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated this week
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- seqfu - Sequece Fastx Utilities☆120Updated 7 months ago
- Nextflow runs monitoring and organisation UI☆77Updated 11 months ago
- A C library for handling bigWig files☆81Updated 7 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆106Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆27Updated this week