nf-core / modulesLinks
Repository to host tool-specific module files for the Nextflow DSL2 community!
☆394Updated this week
Alternatives and similar repositories for modules
Users that are interested in modules are comparing it to the libraries listed below
Sorting:
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆541Updated this week
- Nanopore sequence read simulator☆287Updated this week
- Code and files for the main nf-core website.☆85Updated last week
- Transcript assembly and quantification for RNA-Seq☆484Updated last month
- Nextflow training material☆212Updated this week
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆310Updated 2 weeks ago
- Read-based phasing of genomic variants, also called haplotype assembly☆402Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆350Updated this week
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆197Updated last week
- A grammar of graphics for comparative genomics☆742Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆173Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- An overview of all nanopack tools☆278Updated 2 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆170Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆455Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆497Updated last month
- Python package with helper tools for the nf-core community.☆290Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆401Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆395Updated last month
- Download FASTQ files from SRA or ENA repositories.☆363Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 6 months ago
- Plot structural variant signals from many BAMs and CRAMs☆558Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Structural variant toolkit for VCFs☆397Updated 2 weeks ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated 2 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated last week
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆230Updated 2 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆219Updated 2 months ago