nf-core / omicsgenetraitassociationLinks
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
☆11Updated last year
Alternatives and similar repositories for omicsgenetraitassociation
Users that are interested in omicsgenetraitassociation are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- simplified cellranger for long-read data☆19Updated 2 months ago
- ☆28Updated 6 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆19Updated last week
- ☆13Updated 3 weeks ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ☆23Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated last week
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- ☆21Updated 5 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆22Updated 4 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- A tool for timing complex copy number gains in cancer.☆17Updated 3 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆22Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago