Alternatives and similar repositories for omicsgenetraitassociation:

Users that are interested in omicsgenetraitassociation are comparing it to the libraries listed below

• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 4 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆35Updated last month
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆18Updated last month
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆9Updated 3 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆15Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆17Updated last month
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆16Updated last week
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated 6 months ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆18Updated 3 years ago
• gagneurlab / splicemap
  ☆20Updated 5 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 8 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• pachterlab / qcbc
  ☆19Updated 3 months ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 9 months ago
• McGranahanLab / mhc-hammer
  Pipeline to detect HLA disruption from WES and RNAseq data
  ☆16Updated last month
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆29Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆16Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 5 months ago
• LappalainenLab / lorals
  ☆33Updated last year
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 6 months ago
• mortazavilab / cerberus
  ☆18Updated 7 months ago