A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
☆11Sep 11, 2026Updated last week
Alternatives and similar repositories for omicsgenetraitassociation
Users that are interested in omicsgenetraitassociation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Sep 1, 2026Updated 3 weeks ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Sep 1, 2026Updated 3 weeks ago
- Repository☆10Oct 23, 2024Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Updated this week
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated last year
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated last month
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 9 months ago
- A GitHub action to install Nextflow☆31Aug 20, 2026Updated last month
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Pan-transcriptomic phenotyping☆20Aug 24, 2026Updated last month
- GWAS and rare variants tests at high speed using regenie☆16Jul 30, 2026Updated last month
- Flexible linear mixed model framework for Genome Wide Association Studies☆19Jun 9, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Sep 11, 2026Updated last week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 11 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Jul 28, 2026Updated last month
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Aug 13, 2026Updated last month
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated 3 weeks ago
- gatk4 RNA variant calling pipeline☆61Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 4 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated last month
- Converts bam or cram files to fastq format and does quality control.☆32Sep 14, 2026Updated last week
- Workflow for qiime2 workshop☆17Apr 17, 2024Updated 2 years ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 3 months ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆56Updated this week
- Repo for downloading and storing OMIM data☆20Oct 6, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 2 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- ☆42Jul 3, 2025Updated last year
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year