nf-core / omicsgenetraitassociation

Related projects ⓘ

Alternatives and complementary repositories for omicsgenetraitassociation

• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆15Updated 9 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆34Updated 4 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 weeks ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆19Updated 2 months ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆16Updated 4 years ago
• gagneurlab / absplice
  ☆33Updated 2 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 3 weeks ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆35Updated 3 years ago
• mortazavilab / cerberus
  ☆16Updated 3 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆13Updated 4 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• Xinglab / rMATS-long
  ☆23Updated 3 months ago
• dixonlab / hic_breakfinder
  ☆35Updated 5 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆16Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆27Updated last month
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 3 weeks ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆11Updated 2 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆27Updated 2 months ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆18Updated this week
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆26Updated last year
• hasaru-k / GlimmaV2
  interactive plots for differential expression analysis
  ☆25Updated 2 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 5 months ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆20Updated 2 years ago
• srbehera / DRAGEN_Analysis
  ☆27Updated 6 months ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆20Updated last year