☆13Mar 12, 2020Updated 5 years ago
Alternatives and similar repositories for workshop-genome_assembly
Users that are interested in workshop-genome_assembly are comparing it to the libraries listed below
Sorting:
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Updated this week
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated last month
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Jan 2, 2024Updated 2 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- A organelle de novo genome assembly toolkit☆74Feb 22, 2025Updated last year
- Gene prediction software☆67Oct 22, 2022Updated 3 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- Genome Assembly and Annotation Service code☆217Feb 27, 2026Updated last week
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Micro 612 genomics workshop☆38Apr 23, 2021Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 6 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- ☆14Oct 27, 2025Updated 4 months ago
- A DL-based framework for sequence and shape motif identification in the human genome☆11May 26, 2023Updated 2 years ago
- 🧬 Unique (& conserved) DNA sequence identification☆14Jul 7, 2025Updated 8 months ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆42Jun 24, 2024Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated last month
- PASTASpark is an extension to PASTA (Practical Alignments using SATé and TrAnsitivity) that allows to execute it on a distributed memory …☆10Mar 19, 2019Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- A dotplot generator for large chromosomes☆43Oct 3, 2023Updated 2 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- ☆12May 2, 2025Updated 10 months ago
- A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.☆10Mar 4, 2024Updated 2 years ago
- ☆12Apr 2, 2018Updated 7 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆12Jan 31, 2025Updated last year
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Samples for Apache Spark GraphX library☆10Apr 30, 2016Updated 9 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Slides, Code, and Exercises to support [R Quickstart tutorial](http://conferences.oreilly.com/strata/hadoop-big-data-ca/public/schedule/d…☆10Mar 25, 2016Updated 9 years ago