NBISweden / workshop-genome_assemblyLinks
☆13Updated 5 years ago
Alternatives and similar repositories for workshop-genome_assembly
Users that are interested in workshop-genome_assembly are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆32Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 5 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆26Updated 4 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- genomic alignment similarity search tool☆18Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- ☆12Updated 3 months ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Updated 5 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆34Updated last year
- ☆28Updated 2 years ago