Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
☆19Jun 3, 2025Updated 8 months ago
Alternatives and similar repositories for phageannotator
Users that are interested in phageannotator are comparing it to the libraries listed below
Sorting:
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 3 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆178Feb 20, 2026Updated last week
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Feb 20, 2026Updated last week
- Computation of average nucleotide identity with the use of MMseqs2☆15Dec 11, 2024Updated last year
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- Precise host read removal☆116Sep 4, 2025Updated 5 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- µbinfie blog☆19Jul 21, 2025Updated 7 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- Generation and updating of protein families☆23Updated this week
- Protein structure alignment and search algorithm☆80Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Feb 5, 2026Updated 3 weeks ago
- Bacterial GWAS analysis☆47Feb 17, 2026Updated last week
- ☆22Dec 9, 2023Updated 2 years ago
- Phage Annotation using Protein Structures☆151Feb 9, 2026Updated 3 weeks ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆31Feb 2, 2026Updated last month
- Fast viral consensus genome reconstruction☆25Feb 5, 2026Updated 3 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆166Jan 2, 2026Updated 2 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 5 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- fast phage annotation program☆197Feb 1, 2026Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).