nf-core / toolsLinks
Python package with helper tools for the nf-core community.
☆279Updated last week
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below
Sorting:
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆393Updated 2 weeks ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆226Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆165Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆244Updated last week
- minimal example implementations for bioinformatics workflow managers☆280Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆284Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆253Updated 2 months ago
- GFF and GTF file manipulation and interconversion☆309Updated last year
- This is the development home of the Snakemake wrapper repository, see☆237Updated this week
- RNA-seq workflow using STAR and DESeq2☆346Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆267Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Nextflow training material☆195Updated last week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆346Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated 2 weeks ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆182Updated 2 weeks ago
- genes and genomes at your fingertips☆402Updated last month
- R package for DNA methylation analysis☆240Updated 2 months ago
- Annotation and Ranking of Structural Variation☆267Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- A curated collection of Nextflow implementation patterns☆366Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 6 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆181Updated this week
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆244Updated 2 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213Updated 5 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆214Updated this week