Python package with helper tools for the nf-core community.
☆303Apr 27, 2026Updated this week
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆413Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆108Updated this week
- Simple test framework for Nextflow pipelines☆183Mar 19, 2026Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆160Apr 23, 2026Updated last week
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- A curated list of nextflow based pipelines☆625Jun 23, 2025Updated 10 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 9 months ago
- A DSL for data-driven computational pipelines☆3,356Updated this week
- Nextflow language support for Visual Studio Editor☆37Updated this week
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 5 months ago
- A curated collection of Nextflow implementation patterns☆370Nov 21, 2023Updated 2 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,271Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆92Apr 20, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,445Updated this week
- Assembly and binning of metagenomes☆290Apr 22, 2026Updated last week
- Simple bacterial assembly and annotation pipeline☆84Apr 23, 2026Updated last week
- nf-test utility functions☆12Mar 5, 2026Updated last month
- Experimental features for Nextflow☆50Dec 30, 2025Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆563Apr 21, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆189Updated this week
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆27Apr 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Demultiplexing pipeline for sequencing data☆54Apr 17, 2026Updated last week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- Code and files for the main nf-core website.☆91Updated this week
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆184Apr 20, 2026Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 5 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆223Apr 20, 2026Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆225Nov 20, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆243Apr 22, 2026Updated last week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆323Mar 25, 2026Updated last month
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆189Apr 10, 2026Updated 2 weeks ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆34Apr 16, 2026Updated 2 weeks ago
- A flexible Nextflow-based framework for the definition of sequencing data processing pipelines☆44Nov 7, 2019Updated 6 years ago