Alternatives and similar repositories for test-datasets

Users that are interested in test-datasets are comparing it to the libraries listed below

• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 2 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆173Updated last month
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆85Updated last week
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆183Updated 2 weeks ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated this week
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated this week
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆150Updated this week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated 3 weeks ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆118Updated last year
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆164Updated 2 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆145Updated 3 months ago
• epi2me-labs / wf-transcriptomes
  ☆108Updated 2 weeks ago
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆79Updated last month
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 4 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 6 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated 2 weeks ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆165Updated 2 weeks ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆223Updated last week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated this week
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆246Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆215Updated 2 weeks ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆251Updated 4 months ago
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆103Updated 2 weeks ago
• parklab / bamsnap
  ☆123Updated 4 months ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 4 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated this week
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆58Updated 2 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆147Updated 4 months ago