Test data to be used for automated testing with the nf-core pipelines
☆164Jul 20, 2026Updated this week
Alternatives and similar repositories for test-datasets
Users that are interested in test-datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆421Updated this week
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆56Jul 7, 2026Updated 2 weeks ago
- Customer workshop materials☆19May 13, 2026Updated 2 months ago
- Python package with helper tools for the nf-core community.☆317Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- nf-test utility functions☆12May 22, 2026Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆583Updated this week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆94Jun 23, 2026Updated 3 weeks ago
- Simple test framework for Nextflow pipelines☆189Apr 27, 2026Updated 2 months ago
- A proof of concept daisy-chaining Nextflow workflows☆34Mar 10, 2026Updated 4 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- Demultiplexing pipeline for sequencing data☆56Updated this week
- ☆13Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- A GitHub action to install Nextflow☆31Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41May 29, 2026Updated last month
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated 3 weeks ago
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆27Jul 10, 2026Updated last week
- Nextflow training material☆257Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆110Updated this week
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Jul 9, 2026Updated last week
- A curated collection of Nextflow implementation patterns☆373Nov 21, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆210Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆518May 21, 2026Updated 2 months ago
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- Experimental features for Nextflow☆51Dec 30, 2025Updated 6 months ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆60Jun 22, 2026Updated 3 weeks ago
- Generate beautiful API documentation for Nextflow pipelines☆18May 29, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Apr 16, 2025Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆80Aug 14, 2024Updated last year
- Workflow management with Nextflow and nf-core☆32Jan 21, 2025Updated last year
- Assembly and binning of metagenomes☆308Updated this week
- A proof of concept of RNAseq pipeline☆85Jun 19, 2026Updated last month