Alternatives and similar repositories for test-datasets:

Users that are interested in test-datasets are comparing it to the libraries listed below

• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆78Updated last week
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆221Updated last week
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆323Updated last month
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆174Updated last week
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆159Updated 4 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆212Updated 3 weeks ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆145Updated this week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• epi2me-labs / wf-transcriptomes
  ☆91Updated 3 weeks ago
• nextflow-io / training
  Nextflow training material
  ☆164Updated this week
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆102Updated last week
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆134Updated 10 years ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆208Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆216Updated 10 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆133Updated 2 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆128Updated 3 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆248Updated 3 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆84Updated last week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆101Updated 5 months ago
• parklab / bamsnap
  ☆120Updated 6 months ago
• epi2me-labs / wf-human-variation
  ☆122Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated last week
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆216Updated last month
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 2 months ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆100Updated this week
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆238Updated last month
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆149Updated 11 months ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆165Updated last week
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago