Alternatives and similar repositories for test-datasets

Users that are interested in test-datasets are comparing it to the libraries listed below

• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆183Updated last week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆84Updated this week
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆136Updated 2 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• epi2me-labs / wf-transcriptomes
  ☆104Updated last week
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆94Updated 4 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆109Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated last week
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆108Updated 4 months ago
• nextflow-io / training
  Nextflow training material
  ☆195Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆160Updated 2 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated last week
• mortazavilab / TALON
  Technology agnostic long read analysis pipeline for transcriptomes
  ☆151Updated last year
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆240Updated last week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆101Updated last week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated last week
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆141Updated 2 months ago
• nf-core / bamtofastq
  Converts bam or cram files to fastq format and does quality control.
  ☆30Updated this week
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆79Updated 11 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆117Updated 10 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆217Updated 3 months ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 2 months ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆150Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆213Updated last week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆89Updated this week
• parklab / bamsnap
  ☆123Updated 2 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆245Updated 3 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆162Updated last week