Alternatives and similar repositories for test-datasets

Users that are interested in test-datasets are comparing it to the libraries listed below

• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆184Updated last month
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆173Updated last month
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆86Updated 2 weeks ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆97Updated last week
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated last week
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆105Updated last week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated last week
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆159Updated last month
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 6 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated last week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆166Updated 2 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• epi2me-labs / wf-transcriptomes
  ☆109Updated last month
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆254Updated 5 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last month
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆216Updated last month
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆123Updated 4 months ago
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆80Updated last month
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆146Updated 4 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated last month
• mortazavilab / TALON
  Technology agnostic long read analysis pipeline for transcriptomes
  ☆154Updated last year
• parklab / bamsnap
  ☆122Updated 4 months ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆192Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆199Updated this week
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆58Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆250Updated 3 weeks ago