Test data to be used for automated testing with the nf-core pipelines
☆150Feb 21, 2026Updated last week
Alternatives and similar repositories for test-datasets
Users that are interested in test-datasets are comparing it to the libraries listed below
Sorting:
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆402Updated this week
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Feb 5, 2026Updated 3 weeks ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Python package with helper tools for the nf-core community.☆293Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆550Updated this week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Updated this week
- RNA-seq analysis pipeline for detection of gene-fusions☆171Feb 10, 2026Updated 2 weeks ago
- Demultiplexing pipeline for sequencing data☆53Updated this week
- Nextflow Tower system☆153Jan 30, 2025Updated last year
- A curated collection of Nextflow implementation patterns☆368Nov 21, 2023Updated 2 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Simple test framework for Nextflow pipelines☆177Feb 13, 2026Updated 2 weeks ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 7 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 3 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 7 months ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆199Feb 20, 2026Updated last week
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- ☆13Feb 11, 2026Updated 2 weeks ago
- nf-test utility functions☆12Feb 13, 2026Updated 2 weeks ago
- ☆15Apr 2, 2025Updated 10 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆500Dec 19, 2025Updated 2 months ago
- Nextflow training material☆225Feb 19, 2026Updated last week
- A GitHub action to install Nextflow☆26Updated this week
- Assembly and binning of metagenomes☆273Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- A proof of concept of RNAseq pipeline☆84Jan 23, 2026Updated last month
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- The Nextflow language server☆28Feb 11, 2026Updated 2 weeks ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 3 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆187Feb 8, 2026Updated 3 weeks ago
- Linter rules for Nextflow DSL scripts☆34Feb 16, 2026Updated last week
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Dec 16, 2025Updated 2 months ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago