Alternatives and similar repositories for test-datasets

Users that are interested in test-datasets are comparing it to the libraries listed below

• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆168Updated 2 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆178Updated last month
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆81Updated last month
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆135Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 2 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated 2 months ago
• parklab / bamsnap
  ☆123Updated 3 weeks ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆147Updated 3 weeks ago
• epi2me-labs / wf-transcriptomes
  ☆102Updated 3 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆89Updated 2 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆156Updated 2 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆192Updated this week
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆134Updated this week
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆151Updated this week
• nextflow-io / training
  Nextflow training material
  ☆188Updated 2 weeks ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 8 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 3 weeks ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆107Updated last week
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆140Updated last month
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆239Updated last month
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆160Updated 2 weeks ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆170Updated 2 weeks ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 3 months ago
• Illumina / DRAGMAP
  DRAGEN open-source mapper
  ☆176Updated last year
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆171Updated 9 months ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆216Updated last week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month