grst / nxfvarsLinks
Access nextflow variables from python scripts or notebooks
☆20Updated 4 years ago
Alternatives and similar repositories for nxfvars
Users that are interested in nxfvars are comparing it to the libraries listed below
Sorting:
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Updated 2 years ago
- Monitor computational workflows in real time☆74Updated last year
- Portable WDL workflows for IDseq production pipelines☆32Updated 4 years ago
- A Github action for running a Snakemake workflow☆62Updated last month
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- SQL support plugin for Nextflow☆32Updated 4 months ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆24Updated last year
- Python Primer Design Library☆14Updated 2 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated 2 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆34Updated 3 weeks ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Updated 10 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Nextflow language support for Visual Studio Editor☆37Updated 3 weeks ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Customer workshop materials☆19Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- A rust framework to make using alevin-fry even simpler☆62Updated 9 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last month
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year