Alternatives and similar repositories for nextflow-spark

Users that are interested in nextflow-spark are comparing it to the libraries listed below

• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆28Updated 6 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated this week
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆27Updated 3 months ago
• nmdp-bioinformatics / ngs
  Next generation sequencing (NGS/HTS) tools.
  ☆19Updated last year
• lifebit-ai / GATK
  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
  ☆11Updated 5 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 7 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• magosil86 / witsGWAS
  A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data
  ☆12Updated 7 years ago
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated last year
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 9 years ago
• jnoms / virID
  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
  ☆11Updated 5 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• NBISweden / wgs-structvar
  Whole Genome Sequenceing Structural Variation Pipelines
  ☆17Updated 6 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆34Updated 8 months ago
• abs-tudelft / ArrowSAM
  Genomics datastructures using Apache Arrow
  ☆20Updated 5 years ago
• pachterlab / fastQpick
  ☆27Updated 10 months ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated 5 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 2 weeks ago
• c-guzman / cipher-workflow-platform
  A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…
  ☆19Updated 8 years ago