JaneliaSciComp / nextflow-spark
☆14Updated 2 years ago
Alternatives and similar repositories for nextflow-spark:
Users that are interested in nextflow-spark are comparing it to the libraries listed below
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆24Updated 2 weeks ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 6 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated last month
- The command-line interface to GGD☆42Updated 2 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A tutorial for DLS-2 migration☆29Updated 5 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Luslab nextflow modules☆14Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- SQL support plugin for Nextflow☆26Updated 2 weeks ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆9Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- WDL tools for parsing, type-checking, and more☆25Updated 6 months ago
- Quality of life improvements for Bioinformatics in Python.☆27Updated this week
- Test data for MultiQC.☆22Updated this week
- Access nextflow variables from python scripts or notebooks☆21Updated 3 years ago