Alternatives and similar repositories for nextflow-spark

Users that are interested in nextflow-spark are comparing it to the libraries listed below

• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 4 months ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated 2 months ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 3 months ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 7 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• magosil86 / witsGWAS
  A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data
  ☆12Updated 7 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 8 years ago
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated last year
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 9 months ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 4 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆29Updated 5 years ago
• jnoms / virID
  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
  ☆11Updated 5 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆39Updated last year
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 4 months ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• lifebit-ai / GATK
  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
  ☆12Updated 5 years ago
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated 9 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated last year
• nf-core / vipr
  Assembly and intrahost / low-frequency variant calling for viral samples
  ☆14Updated 5 years ago
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 9 months ago