Alternatives and similar repositories for nextflow-spark:

Users that are interested in nextflow-spark are comparing it to the libraries listed below

• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 2 weeks ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• nf-core / vipr
  Assembly and intrahost / low-frequency variant calling for viral samples
  ☆14Updated 5 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆29Updated 5 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆24Updated last month
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• lifebit-ai / GATK
  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
  ☆12Updated 5 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 5 years ago
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated last month
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• jnoms / virID
  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
  ☆11Updated 4 years ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆15Updated this week
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 4 years ago
• metagenomics / 2015-biogas-cebitec
  Bremges et al. (2015). GigaScience, 4:33.
  ☆12Updated last year
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 7 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆35Updated last year
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 5 months ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆40Updated this week
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆28Updated last year
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆40Updated 2 weeks ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month