JaneliaSciComp / nextflow-sparkLinks
☆15Updated 10 months ago
Alternatives and similar repositories for nextflow-spark
Users that are interested in nextflow-spark are comparing it to the libraries listed below
Sorting:
- A tutorial for DLS-2 migration☆28Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated last month
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Master of Pores 2☆23Updated last year
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- ☆27Updated 11 months ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last month
- Nextflow language support for Visual Studio Editor☆37Updated 2 weeks ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Updated 6 years ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Query language for filtering SAM/BAM reads☆31Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year