JaneliaSciComp / nextflow-sparkLinks
☆15Updated 9 months ago
Alternatives and similar repositories for nextflow-spark
Users that are interested in nextflow-spark are comparing it to the libraries listed below
Sorting:
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 weeks ago
- A tutorial for DLS-2 migration☆28Updated 6 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Updated 5 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆44Updated this week
- WDL tools for parsing, type-checking, and more☆27Updated 4 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- ☆27Updated 11 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Updated last year
- Master of Pores 2☆23Updated last year
- Query language for filtering SAM/BAM reads☆31Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 7 months ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆99Updated last month
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- UMCU Genetics Nextflow modules☆29Updated last year