JaneliaSciComp / nextflow-spark
☆14Updated 2 years ago
Alternatives and similar repositories for nextflow-spark:
Users that are interested in nextflow-spark are comparing it to the libraries listed below
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- Docker images of bioinformatics software☆21Updated 7 years ago
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Luslab nextflow modules☆14Updated 3 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆31Updated 10 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 4 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 6 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- SQL support plugin for Nextflow☆26Updated this week
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆9Updated 2 years ago
- A tutorial for DLS-2 migration☆29Updated 5 years ago
- ☆21Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆12Updated 6 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- Freelance bioinformaticians directory☆9Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆24Updated this week
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago