nextflow-io / trainingLinks
Nextflow training material
☆204Updated this week
Alternatives and similar repositories for training
Users that are interested in training are comparing it to the libraries listed below
Sorting:
- Download FASTQ files from SRA or ENA repositories.☆350Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆183Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆261Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆246Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- Tool for plotting sequencing data along genomic coordinates.☆322Updated 5 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆215Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆276Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆182Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆253Updated 2 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last week
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Full-Length Alternative Isoform analysis of RNA☆244Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆271Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆396Updated last month
- parallel fastq-dump wrapper☆300Updated 2 years ago
- ☆274Updated last month
- Genome Assembly and Annotation Service code☆216Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆347Updated 2 weeks ago
- TransDecoder source☆299Updated 2 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆280Updated 3 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆282Updated 3 months ago
- Web application to explore the Sequence Read Archive.☆218Updated 4 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆445Updated 11 months ago
- Documentation for the ANNOVAR software☆245Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆348Updated this week