Alternatives and similar repositories for nf-k8s-best-practices:

Users that are interested in nf-k8s-best-practices are comparing it to the libraries listed below

• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆29Updated 5 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 6 months ago
• nextflow-io / nf-prov
  ☆30Updated last week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 9 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆40Updated this week
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆37Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆72Updated this week
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 months ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆53Updated last year
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 7 months ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated last week
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 6 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆86Updated 6 years ago
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆47Updated last week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 2 months ago
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• peterk87 / sublime-nextflow
  Nextflow workflow syntax highlighting and snippets for Sublime Text 4
  ☆24Updated 4 months ago
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆99Updated 2 years ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆63Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆77Updated 9 months ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆47Updated 2 months ago
• snacktavish / TreeToReads
  Pipeline to generate NGS reads from a phylogeny
  ☆39Updated 2 years ago
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆32Updated this week
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆83Updated 7 months ago
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 3 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago