seqeralabs / nf-k8s-best-practicesLinks
A best practices guide for Nextflow on Kubernetes
☆19Updated last year
Alternatives and similar repositories for nf-k8s-best-practices
Users that are interested in nf-k8s-best-practices are comparing it to the libraries listed below
Sorting:
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 9 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A tutorial for DLS-2 migration☆28Updated 5 years ago
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- Reference genome resource manager☆75Updated last year
- Demultiplexing pipeline for sequencing data☆50Updated last week
- CLI for interacting with Cromwell servers☆55Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- A GitHub action to install Nextflow☆21Updated last week
- Submit slurm sbatch jobs without a script☆68Updated this week
- ☆30Updated 3 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 5 months ago
- Nextflow language support for Visual Studio Editor☆34Updated this week
- Transcript versions for HGVS libraries☆33Updated 2 weeks ago
- SQL support plugin for Nextflow☆31Updated 2 months ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆23Updated 11 months ago
- Grep for FASTQ files☆99Updated 4 months ago
- conda recipes for genomic data☆85Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- On-demand containers provisioning service☆43Updated this week
- Nextflow Tower CLI tool☆50Updated this week
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- ☆82Updated 3 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Model files for Sentieon variant callers☆16Updated this week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆30Updated 3 weeks ago
- A collection of modules and sub-workflows for Nextflow☆27Updated 2 weeks ago
- ☆38Updated 6 months ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 5 months ago