stevekm / nextflow-demosView external linksLinks
Example Nextflow pipelines and programming techniques
☆107Sep 19, 2025Updated 4 months ago
Alternatives and similar repositories for nextflow-demos
Users that are interested in nextflow-demos are comparing it to the libraries listed below
Sorting:
- A curated collection of Nextflow implementation patterns☆367Nov 21, 2023Updated 2 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- A curated list of nextflow based pipelines☆620Jun 23, 2025Updated 7 months ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆246Aug 10, 2025Updated 6 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated last month
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Sep 28, 2018Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Python wrapper around Nextflow.☆62Feb 1, 2026Updated last week
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 7 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 7 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 2 months ago
- Nextflow basic tutorial for newbie users☆33Jun 17, 2018Updated 7 years ago
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated 6 months ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Nov 18, 2025Updated 2 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 3 years ago
- ☆10May 17, 2017Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆28Feb 6, 2026Updated last week
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated last month
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆138Dec 14, 2022Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆107Feb 4, 2026Updated last week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- ☆10Feb 28, 2018Updated 7 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago