Alternatives and similar repositories for nextflow-demos:

Users that are interested in nextflow-demos are comparing it to the libraries listed below

• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆132Updated 2 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆109Updated last month
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆75Updated 2 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆145Updated this week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 4 years ago
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆141Updated 6 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆103Updated 3 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆95Updated 2 months ago
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆155Updated last year
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆121Updated 4 years ago
• nextflow-io / training
  Nextflow training material
  ☆136Updated this week
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆149Updated last month
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆209Updated 3 weeks ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆245Updated last year
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆60Updated 2 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆77Updated this week
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆200Updated 2 months ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆138Updated 5 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated this week
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 3 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆72Updated this week
• schatzlab / appliedgenomics2018
  Materials for Spring 2018 Applied Genomics Course
  ☆78Updated 6 years ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆156Updated this week
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆320Updated 3 months ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆138Updated 10 months ago