Alternatives and similar repositories for nextflow-demos

Users that are interested in nextflow-demos are comparing it to the libraries listed below

• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 6 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆133Updated 2 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 3 months ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆137Updated 5 years ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆150Updated last year
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆85Updated 3 weeks ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆108Updated 4 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆160Updated last week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆140Updated last year
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated last week
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 2 months ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆189Updated this week
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆141Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆102Updated 3 weeks ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆105Updated 3 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆110Updated last month
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆168Updated this week
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆111Updated 6 years ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆103Updated last month
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆160Updated 2 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆198Updated last year