nextflow-io / nf-sqldbView external linksLinks
SQL support plugin for Nextflow
☆32Sep 15, 2025Updated 4 months ago
Alternatives and similar repositories for nf-sqldb
Users that are interested in nf-sqldb are comparing it to the libraries listed below
Sorting:
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 5 months ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Simple test framework for Nextflow pipelines☆176Feb 5, 2026Updated last week
- A best practices guide for Nextflow on Kubernetes☆20Nov 8, 2023Updated 2 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 13, 2024Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- Configure workflow/pipeline tests using yaml files.☆70Aug 4, 2024Updated last year
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 3 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- A conda-smithy repository for python-duckdb.☆13Jan 29, 2026Updated 2 weeks ago
- Tangle your Org files☆12Feb 5, 2022Updated 4 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated last month
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 7 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Jan 21, 2022Updated 4 years ago
- GitHub action to setup apptainer☆16Jan 7, 2025Updated last year
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated 11 months ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆15Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Nextflow language support for Visual Studio Editor☆37Jan 23, 2026Updated 3 weeks ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆71Updated this week
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Rust Bindings for the TileDB C API, generated using bindgen☆16Jan 20, 2023Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆44Feb 6, 2026Updated last week
- Nextflow Tower system☆152Jan 30, 2025Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 7 months ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Experimenting with LLMs through Ollama and retrieval augmented generation (RAG) in Rust☆19May 23, 2024Updated last year
- ☆16Jan 6, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A GitHub action to install Nextflow☆26Updated this week
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- Nextflow Tower CLI tool☆52Feb 4, 2026Updated last week
- Unified biological sequence manipulation in Python☆208Jun 12, 2024Updated last year