SQL support plugin for Nextflow
☆32Aug 10, 2026Updated this week
Alternatives and similar repositories for nf-sqldb
Users that are interested in nf-sqldb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 11 months ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A best practices guide for Nextflow on Kubernetes☆22Nov 8, 2023Updated 2 years ago
- Customer workshop materials☆19May 13, 2026Updated 3 months ago
- Simple test framework for Nextflow pipelines☆190Apr 27, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 2 months ago
- Nextflow Tower CLI tool☆55Updated this week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆11Mar 29, 2023Updated 3 years ago
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- Converts bam or cram files to fastq format and does quality control.☆32Jul 24, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Aug 3, 2026Updated last week
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Jul 25, 2026Updated 3 weeks ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Testing building mulled containers for multi-requirement tools.☆85Updated this week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Variant call verification☆19May 12, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated 11 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Nov 8, 2023Updated 2 years ago
- Emacs major mode for Nextflow☆25Aug 4, 2026Updated last week
- Nascent Transcription Processing Pipeline☆24Jul 27, 2026Updated 2 weeks ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- ☆14Sep 11, 2023Updated 2 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 11 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 2 weeks ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 6 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30May 17, 2026Updated 2 months ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆17Updated this week
- Experimental features for Nextflow☆53Dec 30, 2025Updated 7 months ago