Alternatives and similar repositories for nf-sqldb

Users that are interested in nf-sqldb are comparing it to the libraries listed below

• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆10Updated 2 months ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 3 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 5 months ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated last week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 4 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• sandbox-bio / sandbox.bio
  Interactive bioinformatics tutorials
  ☆32Updated 3 weeks ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated last month
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• bioinfo-pf-curie / geniac
  Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for th…
  ☆9Updated last month
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆22Updated last week
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆13Updated 3 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 7 months ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆42Updated 3 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week