☆14May 2, 2025Updated last year
Alternatives and similar repositories for ont-spectre
Users that are interested in ont-spectre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- ☆36Aug 18, 2024Updated 2 years ago
- Tandem repeat genotyping with long reads☆40Sep 23, 2025Updated 11 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆87Updated this week
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- ☆22Nov 24, 2025Updated 9 months ago
- ☆24Feb 22, 2023Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 5 months ago
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated 2 months ago
- Workflow to annotate SNVs, indels, and structural variants☆17May 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆95Jul 29, 2026Updated last month
- ☆17Mar 17, 2023Updated 3 years ago
- HiFi-based caller for highly similar paralogous genes☆74Aug 14, 2026Updated 2 weeks ago
- ☆130Aug 24, 2026Updated last week
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- ☆20May 8, 2026Updated 3 months ago
- Structural Variants ANnotator (SVAN)☆18Jun 27, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated 11 months ago
- ☆30Mar 1, 2026Updated 6 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆262Jul 10, 2026Updated last month
- ☆27Nov 14, 2025Updated 9 months ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 5 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆170Mar 25, 2026Updated 5 months ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆46Mar 12, 2025Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated last year
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- CoRAL: Reconstruction of focal amplifications with long reads☆31Aug 22, 2026Updated last week
- A bioinformatics tool for working with modified bases☆272Jul 14, 2026Updated last month
- ☆179Jul 20, 2026Updated last month