☆21Nov 24, 2025Updated 6 months ago
Alternatives and similar repositories for wf-somatic-variation
Users that are interested in wf-somatic-variation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Apr 10, 2026Updated 2 months ago
- ☆170Jan 22, 2026Updated 4 months ago
- ☆13May 2, 2025Updated last year
- ☆34Mar 9, 2026Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆172Jun 8, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 2 months ago
- ☆114Jun 9, 2026Updated last week
- Somatic structural variant caller for long-read data☆91Jun 2, 2026Updated 2 weeks ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- ☆49Jan 23, 2026Updated 4 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆185Jun 2, 2026Updated 2 weeks ago
- ☆50Nov 24, 2025Updated 6 months ago
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Sep 11, 2023Updated 2 years ago
- Comparison of multiple long read datasets☆173Dec 2, 2025Updated 6 months ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- ☆44Mar 13, 2026Updated 3 months ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-…☆37Nov 25, 2024Updated last year
- ☆41Dec 15, 2025Updated 6 months ago
- Small variant calling for haploid samples☆56Mar 3, 2026Updated 3 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- ☆111Jan 23, 2026Updated 4 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆108May 30, 2026Updated 2 weeks ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆32May 11, 2026Updated last month
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Oct 7, 2024Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Jun 10, 2026Updated last week
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jun 1, 2026Updated 2 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆54Jun 11, 2026Updated last week
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆97Jan 28, 2026Updated 4 months ago