Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis
☆53Sep 27, 2025Updated 11 months ago
Alternatives and similar repositories for modbam2bed
Users that are interested in modbam2bed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bioinformatics tool for working with modified bases☆276Jul 14, 2026Updated 2 months ago
- ☆14Sep 11, 2023Updated 3 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Jul 21, 2026Updated 2 months ago
- Tools for plotting methylation data in various ways☆198Sep 17, 2026Updated last week
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Copy number caller for long read data including SNV utilization☆71Mar 31, 2025Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- ☆52Apr 10, 2026Updated 5 months ago
- ☆27Jul 30, 2026Updated last month
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆19May 29, 2026Updated 3 months ago
- ☆34Mar 9, 2026Updated 6 months ago
- ☆14May 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 9 months ago
- Somatic structural variant caller for long-read data☆94Jun 30, 2026Updated 2 months ago
- ☆29Oct 17, 2023Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆144Jun 10, 2026Updated 3 months ago
- ☆22Sep 1, 2026Updated 3 weeks ago
- ☆42May 19, 2025Updated last year
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Tandem repeat expansion detection or genotyping from long-read alignments☆172Mar 25, 2026Updated 5 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated last month
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated last month
- ☆33Nov 6, 2022Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- ☆179Jul 20, 2026Updated 2 months ago
- ☆37Jul 3, 2026Updated 2 months ago
- A complete diploid human genome☆160Aug 10, 2026Updated last month
- ☆36Aug 18, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- Oxford Nanopore's Basecaller☆875Sep 3, 2026Updated 3 weeks ago
- Open Human Genome Library☆69Dec 22, 2025Updated 9 months ago
- ☆262Sep 13, 2026Updated last week
- Tools for fiberseq data written in rust.☆71Updated this week
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆392Sep 15, 2026Updated last week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆89Sep 9, 2026Updated 2 weeks ago