PacificBiosciences / paraphaseLinks
HiFi-based caller for highly similar paralogous genes
☆45Updated this week
Alternatives and similar repositories for paraphase
Users that are interested in paraphase are comparing it to the libraries listed below
Sorting:
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆54Updated 2 weeks ago
- Simple pileup-based variant caller☆91Updated 2 months ago
- Variant annotation and merging pipeline☆36Updated last month
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 3 months ago
- ☆76Updated 5 years ago
- ☆48Updated last year
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- Structural Variant Index☆75Updated 7 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last year
- Toolkit for calling structural variants using short or long reads☆107Updated last month
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year