☆35Mar 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for NanoMethViz
Users that are interested in NanoMethViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 8 months ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated last month
- Tools for plotting methylation data in various ways☆182Mar 24, 2026Updated 3 weeks ago
- A bioinformatics tool for working with modified bases☆259Jan 19, 2026Updated 2 months ago
- Nanopore data analysis in R☆41Jul 24, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Methylation/modified base calling separated from basecalling.☆186Sep 17, 2024Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Apr 18, 2022Updated 3 years ago
- ☆12May 2, 2025Updated 11 months ago
- python plotly Circos from VCF☆42Jun 20, 2024Updated last year
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated 2 weeks ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Apr 5, 2026Updated last week
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- ☆14Oct 17, 2024Updated last year
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆52Sep 27, 2025Updated 6 months ago
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated last month
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- ☆46Jul 6, 2017Updated 8 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 8 months ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- ☆84Mar 3, 2025Updated last year
- Tandem repeat genotyping from long reads☆21Apr 5, 2026Updated last week
- ☆126Apr 3, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Research release basecalling models and configurations☆117May 21, 2025Updated 10 months ago
- visual analysis of your VCF files☆40Dec 3, 2022Updated 3 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated last month
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- ☆35Aug 18, 2024Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆110Mar 30, 2026Updated 2 weeks ago