humanlongevity / tredparse
TREDPARSE: HLI Short Tandem Repeat (STR) caller
☆25Updated 4 years ago
Alternatives and similar repositories for tredparse:
Users that are interested in tredparse are comparing it to the libraries listed below
- ☆51Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆22Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆12Updated last year
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- ☆35Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- A transposition caller.☆10Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 9 months ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Computes various SV statistics☆14Updated last year