dashnowlab / STRchive
Short Tandem Repeat disease loci resource
☆13Updated this week
Alternatives and similar repositories for STRchive:
Users that are interested in STRchive are comparing it to the libraries listed below
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Working space for the GIAB TR benchmarking project☆20Updated 2 months ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- ☆39Updated 4 months ago
- De novo tandem repeat calling from PacBio HiFi data☆15Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆34Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 9 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated 2 weeks ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆28Updated last month
- Variant annotation and merging pipeline☆31Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 2 months ago
- ☆16Updated this week
- Tandem repeat genotyping with long reads☆27Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Population-wide Deletion Calling☆35Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 3 months ago
- ☆29Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆27Updated 5 months ago