Short Tandem Repeat disease loci resource
☆26Mar 12, 2026Updated last week
Alternatives and similar repositories for STRchive
Users that are interested in STRchive are comparing it to the libraries listed below
Sorting:
- ☆23Feb 22, 2023Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆39Dec 15, 2025Updated 3 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Mar 5, 2026Updated 2 weeks ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 5 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆43Mar 12, 2026Updated last week
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 2 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- A repository for version control of consortium data model(s)☆16Feb 25, 2026Updated 3 weeks ago
- ☆12May 2, 2025Updated 10 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 4 months ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 3 months ago
- python plotly Circos from VCF☆40Jun 20, 2024Updated last year
- A structural variant filtering and prioritization tool for long-read sequencing data☆37Updated this week
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆12Mar 4, 2026Updated 2 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆39Updated this week
- ☆22Aug 8, 2022Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- ☆13Dec 16, 2024Updated last year
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆48Oct 22, 2024Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Jan 29, 2026Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Mar 9, 2026Updated last week
- ☆22Jan 3, 2025Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year