dashnowlab / STRchiveLinks
Short Tandem Repeat disease loci resource
☆18Updated last week
Alternatives and similar repositories for STRchive
Users that are interested in STRchive are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- ☆19Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- ☆21Updated 3 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- ☆41Updated 9 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- A python wrapper around SURVIVOR☆20Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆19Updated 3 months ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated 2 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- SV calling for diploid assemblies☆27Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- ☆31Updated 2 years ago
- ☆22Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week