Alternatives and similar repositories for STRchive

Users that are interested in STRchive are comparing it to the libraries listed below

• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆38Updated 7 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated last week
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆65Updated last month
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆34Updated 2 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆32Updated last month
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated 2 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆30Updated last year
• UCSC-nanopore-cgl / margin
  ☆33Updated 3 years ago
• vgteam / vg_wdl
  Workflow Description Language (WDL) scripts for common vg workflows
  ☆20Updated 3 weeks ago
• jbelyeu / PlotCritic
  Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…
  ☆13Updated 3 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆33Updated last week
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆40Updated 4 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆50Updated 9 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated last month
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 3 weeks ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 3 months ago
• KolmogorovLab / minda
  ☆25Updated 7 months ago
• hitbc / gcSV
  ☆21Updated 9 months ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆35Updated 2 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 9 months ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆44Updated 3 weeks ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆19Updated this week
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆21Updated 9 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆46Updated 3 months ago