dashnowlab / STRchiveLinks
Short Tandem Repeat disease loci resource
☆24Updated 2 weeks ago
Alternatives and similar repositories for STRchive
Users that are interested in STRchive are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 10 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Structural variant (SV) analysis tools☆40Updated last year
- ☆51Updated last year
- ☆33Updated 3 years ago
- ☆21Updated last week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Updated 3 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆33Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- ☆27Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 months ago
- Tandem repeat genotyping from long reads☆20Updated 2 weeks ago