PacificBiosciences / HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
☆40Updated 3 months ago
Alternatives and similar repositories for HiFiCNV:
Users that are interested in HiFiCNV are comparing it to the libraries listed below
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- ☆29Updated last month
- Variant annotation and merging pipeline☆31Updated last month
- ☆42Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- PacBio BAM toolkit☆39Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- ☆28Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆72Updated 2 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- ☆22Updated 3 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- ☆76Updated 4 months ago
- ☆32Updated this week
- A pipeline for isoseq☆23Updated 6 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- WDL workflows for variant calling and assembly using ONT☆32Updated this week
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆40Updated last month
- SRF: Satellite Repeat Finder☆91Updated last year
- Structural variant caller☆54Updated 3 years ago
- ☆43Updated 8 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- ☆76Updated 4 years ago
- Copy number caller for long read data including SNV utilization☆55Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 10 months ago