PacificBiosciences / HiFiCNVLinks
Copy number variant caller and depth visualization utility for PacBio HiFi reads
☆44Updated last year
Alternatives and similar repositories for HiFiCNV
Users that are interested in HiFiCNV are comparing it to the libraries listed below
Sorting:
- ☆79Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆31Updated 9 months ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- ☆43Updated last year
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago
- SRF: Satellite Repeat Finder☆98Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆53Updated 3 months ago
- ☆31Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated last month
- ☆66Updated last month
- A program for assessing the T2T genome continuity☆88Updated 3 weeks ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆64Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆37Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆36Updated 3 months ago
- ☆38Updated 3 weeks ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- ☆81Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago