PacificBiosciences / HiFiCNVLinks
Copy number variant caller and depth visualization utility for PacBio HiFi reads
☆43Updated 11 months ago
Alternatives and similar repositories for HiFiCNV
Users that are interested in HiFiCNV are comparing it to the libraries listed below
Sorting:
- ☆78Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆51Updated 2 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- ☆66Updated last month
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- ☆42Updated last year
- Application of pan-genome for population☆110Updated 11 months ago
- ☆81Updated 7 months ago
- ☆31Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆30Updated 9 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Structural variant caller for low-depth long-read sequencing data☆27Updated 9 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆50Updated 7 months ago
- A battery of methylation tools for PacBio HiFi reads☆42Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆25Updated last year
- ☆37Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆24Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago