Alternatives and similar repositories for HiFiCNV

Users that are interested in HiFiCNV are comparing it to the libraries listed below

• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated this week
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated this week
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆52Updated 2 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆36Updated 3 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 3 months ago
• maickrau / ribotin
  ☆35Updated 2 weeks ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated 11 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• farhangus / Sniffles2_plot
  ☆30Updated 9 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• baozg / phased-assembly-check
  ☆29Updated 5 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 3 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆29Updated 3 weeks ago
• Shians / NanoMethViz
  ☆28Updated last month
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆75Updated last month
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆36Updated 11 months ago
• epi2me-labs / wf-pore-c
  ☆40Updated 3 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago