PacificBiosciences / HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
☆35Updated 5 months ago
Related projects: ⓘ
- A battery of methylation tools for PacBio HiFi reads☆26Updated 3 weeks ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- WDL workflows for variant calling and assembly using ONT☆28Updated 2 months ago
- Phased assembly variant caller☆87Updated this week
- Structural variant caller☆53Updated 2 years ago
- Somatic structural variant caller for long-read data☆43Updated 3 weeks ago
- ☆51Updated this week
- ☆45Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- ☆39Updated 4 months ago
- Variant annotation and merging pipeline☆26Updated 3 weeks ago
- ☆48Updated last year
- PacBio BAM toolkit☆31Updated 9 months ago
- Algorithm to detect germline and de novo transposon insertions☆26Updated 5 months ago
- Structural variant merging tool☆44Updated 3 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆31Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆47Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆20Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆93Updated 3 years ago
- ☆22Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated this week
- Evaluating genome assemblies☆53Updated this week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆58Updated 3 years ago
- ☆27Updated 2 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆31Updated 2 years ago
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- ☆23Updated last month