PacificBiosciences / HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
☆38Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for HiFiCNV
- PacBio BAM toolkit☆39Updated 3 weeks ago
- ☆50Updated last year
- A battery of methylation tools for PacBio HiFi reads☆28Updated 2 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆70Updated last month
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Phased assembly variant caller☆98Updated 3 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆45Updated 5 months ago
- SRF: Satellite Repeat Finder☆87Updated 10 months ago
- perSVade: personalized Structural Variation detection☆37Updated 5 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆97Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆64Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆70Updated this week
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆48Updated last month
- Somatic structural variant caller for long-read data☆50Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- ☆30Updated 2 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆71Updated 5 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆36Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Evaluating genome assemblies☆59Updated last week
- Copy number caller for long read data including SNV utilization☆53Updated last month