Alternatives and similar repositories for FixItFelix

Users that are interested in FixItFelix are comparing it to the libraries listed below

• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated last year
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆33Updated last month
• dashnowlab / STRchive
  Short Tandem Repeat disease loci resource
  ☆21Updated this week
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated last month
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• fakedrtom / SVAFotate
  ☆44Updated 11 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 10 months ago
• UCSC-nanopore-cgl / margin
  ☆32Updated 2 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆22Updated last year
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• MeHelmy / princess
  ☆81Updated 5 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆30Updated 4 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 5 months ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated 11 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆30Updated 2 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• PacificBiosciences / pbfusion
  ☆23Updated 3 months ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 4 months ago