CoRAL: Reconstruction of focal amplifications with long reads
☆31Jul 17, 2026Updated last week
Alternatives and similar repositories for CoRAL
Users that are interested in CoRAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆82Jul 17, 2026Updated last week
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated 11 months ago
- ☆26Dec 18, 2024Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆85Updated this week
- ☆30Mar 1, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆35Updated this week
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆162Jun 18, 2024Updated 2 years ago
- Somatic structural variant caller for long-read data☆92Jun 30, 2026Updated 3 weeks ago
- BISulfite-seq CUI Toolkit☆26Jun 24, 2026Updated last month
- ☆14May 2, 2025Updated last year
- ☆14Mar 28, 2025Updated last year
- ☆11May 12, 2021Updated 5 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆30Oct 10, 2025Updated 9 months ago
- A package to run real time analysis of nanopore methylation data.☆24Updated this week
- FusionInspector code☆63May 21, 2026Updated 2 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Jul 1, 2026Updated 3 weeks ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆80Jul 12, 2023Updated 3 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- ☆17May 30, 2022Updated 4 years ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- ☆17Oct 3, 2023Updated 2 years ago
- ☆19Apr 14, 2024Updated 2 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Jul 8, 2026Updated 2 weeks ago
- ☆12Nov 21, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jul 8, 2026Updated 2 weeks ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- SV clustering☆31Jul 5, 2021Updated 5 years ago
- ☆17Jan 15, 2025Updated last year
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆43Jun 26, 2026Updated 3 weeks ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆161Jan 23, 2026Updated 6 months ago