CoRAL: Reconstruction of focal amplifications with long reads
☆24Apr 7, 2026Updated last week
Alternatives and similar repositories for CoRAL
Users that are interested in CoRAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 7 months ago
- ☆27Mar 1, 2026Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Jun 3, 2025Updated 10 months ago
- ☆12May 2, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11May 12, 2021Updated 4 years ago
- ☆14Mar 28, 2025Updated last year
- ☆26Dec 18, 2024Updated last year
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated last month
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆79Updated this week
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆72Updated this week
- FusionInspector code☆59Updated this week
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Sep 20, 2023Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆159Jun 18, 2024Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Apr 6, 2026Updated last week
- ☆17May 30, 2022Updated 3 years ago
- ☆17Oct 3, 2023Updated 2 years ago
- ☆19Apr 14, 2024Updated 2 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Mar 26, 2026Updated 2 weeks ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- ☆22Jul 27, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆124Mar 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Remote attestation framework for Fortanix EDP☆22Jan 11, 2021Updated 5 years ago
- ☆27May 8, 2022Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆87Nov 13, 2025Updated 5 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 weeks ago