davidebolo1993 / TRiCoLORView external linksLinks
Tandem Repeats Caller for LOng Reads
☆17May 28, 2021Updated 4 years ago
Alternatives and similar repositories for TRiCoLOR
Users that are interested in TRiCoLOR are comparing it to the libraries listed below
Sorting:
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 4 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 3 weeks ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- ☆23Jul 29, 2025Updated 6 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 3 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 2 years ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated 10 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- ☆11May 2, 2025Updated 9 months ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 2 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Aug 25, 2025Updated 5 months ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 9 months ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- Noise-Cancelling Repeat Finder☆27Apr 11, 2023Updated 2 years ago
- ☆51Jun 25, 2024Updated last year
- ☆14Oct 17, 2024Updated last year
- ☆14Sep 11, 2023Updated 2 years ago
- ATaRVa - Analysis of Tandem Repeat Variation☆16Feb 5, 2026Updated last week
- ☆15Jul 21, 2022Updated 3 years ago
- VarIant SimulatOR for short, long and linked reads☆51Oct 21, 2024Updated last year
- Tandem repeat genotyping from long reads☆20Updated this week
- Population-wide Deletion Calling☆35Apr 16, 2025Updated 9 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 9 months ago
- VNTR annotation using motif selection☆40Updated this week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Aug 17, 2025Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Dec 6, 2025Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 2 months ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆142Nov 24, 2025Updated 2 months ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Aug 20, 2020Updated 5 years ago