HKU-BAL / ClairS-TOLinks
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
☆69Updated last month
Alternatives and similar repositories for ClairS-TO
Users that are interested in ClairS-TO are comparing it to the libraries listed below
Sorting:
- ClairS - a deep-learning method for long-read somatic small variant calling☆93Updated 3 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Somatic structural variant caller for long-read data☆80Updated 2 weeks ago
- SV detection tool for nanopore sequence reads☆93Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last week
- cDNA read preprocessing☆78Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- ☆50Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆146Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 6 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆47Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆36Updated this week
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- TIDDIT - structural variant calling☆76Updated 6 months ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Human reference genome analysis sets☆55Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆35Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago