KolmogorovLab / mindaLinks
☆26Updated 8 months ago
Alternatives and similar repositories for minda
Users that are interested in minda are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Reconstruction of focal amplifications with long reads☆23Updated last month
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- ☆51Updated 6 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆44Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆38Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Structural variant merging tool☆57Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Human reference genome analysis sets☆56Updated 2 years ago