☆30Mar 1, 2026Updated 5 months ago
Alternatives and similar repositories for minda
Users that are interested in minda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for somatic structural variant calling using long reads☆177Jun 8, 2026Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆85Updated this week
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- ☆130Jul 22, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A long-read somatic phasing software for tumor-only sequencing☆15Dec 18, 2025Updated 7 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆93Jul 29, 2026Updated last week
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 2 months ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated last month
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆73Jul 21, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- CAncer Standards Long-read Evaluation☆62Jul 27, 2026Updated 2 weeks ago
- ☆80Jul 12, 2023Updated 3 years ago
- ☆14May 2, 2025Updated last year
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated last month
- ☆20Nov 17, 2025Updated 8 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- ☆16Apr 2, 2024Updated 2 years ago
- ☆26Dec 18, 2024Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- ☆15May 27, 2025Updated last year
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 9 months ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆20Aug 3, 2026Updated last week
- Structural variation and indel detection by local assembly☆256Jul 15, 2026Updated 3 weeks ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- ☆44Jul 16, 2026Updated 3 weeks ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year