KolmogorovLab / mindaLinks
☆23Updated 4 months ago
Alternatives and similar repositories for minda
Users that are interested in minda are comparing it to the libraries listed below
Sorting:
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- ☆23Updated 8 months ago
- Easy genomic regions for short-read variant calling☆36Updated 2 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- ☆44Updated 11 months ago
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- ☆19Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆32Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated this week
- Variant annotation and merging pipeline☆39Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 10 months ago
- Structural variant merging tool☆53Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆29Updated 2 years ago
- ☆51Updated 6 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago