Alternatives and similar repositories for minda:

Users that are interested in minda are comparing it to the libraries listed below

• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆21Updated this week
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 4 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 2 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated last month
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated last week
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last month
• XiDsLab / TAGET
  ☆18Updated 2 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated 9 months ago
• LappalainenLab / lorals
  ☆35Updated 2 years ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆20Updated 2 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated 10 months ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆18Updated last month
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆16Updated 11 months ago
• crimBubble / ECCsplorer
  The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…
  ☆20Updated last year
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 6 months ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆21Updated 4 years ago
• WGLab / LongReadSum
  ☆17Updated last month
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated 10 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 6 months ago