PacificBiosciences / HiFi-somatic-WDLLinks
Tumor-normal variant calling workflow using HiFi reads
☆20Updated last month
Alternatives and similar repositories for HiFi-somatic-WDL
Users that are interested in HiFi-somatic-WDL are comparing it to the libraries listed below
Sorting:
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year
- ☆48Updated last year
- ☆34Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆36Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 11 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- VNTR annotation using motif selection☆35Updated last month
- A battery of methylation tools for PacBio HiFi reads☆38Updated last month
- ☆80Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 4 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- SV genotyping with long reads☆39Updated 2 years ago
- ☆31Updated 10 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆54Updated 2 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- SV calling for diploid assemblies☆28Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- ☆31Updated last year
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago