CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
☆14Aug 21, 2025Updated 11 months ago
Alternatives and similar repositories for cresil
Users that are interested in cresil are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated 2 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Apr 15, 2024Updated 2 years ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Jul 17, 2026Updated last week
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆85Updated this week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆68Jul 17, 2024Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Updated this week
- Support EMCRs to develop their computing skills☆13Jun 21, 2026Updated last month
- ☆14May 2, 2025Updated last year
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- ☆14Mar 28, 2025Updated last year
- ☆11May 12, 2021Updated 5 years ago
- A package to run real time analysis of nanopore methylation data.☆24Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- ☆12May 4, 2021Updated 5 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆14Sep 4, 2021Updated 4 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆15Nov 7, 2024Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆76Oct 21, 2023Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 3 months ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Jul 10, 2026Updated 2 weeks ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- SV clustering☆31Jul 5, 2021Updated 5 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆62Aug 28, 2025Updated 10 months ago
- pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/☆29Dec 13, 2025Updated 7 months ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆38Apr 13, 2024Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆35Jun 29, 2026Updated 3 weeks ago
- ☆80Jul 12, 2023Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago