visanuwan / cresilLinks
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
☆12Updated 3 months ago
Alternatives and similar repositories for cresil
Users that are interested in cresil are comparing it to the libraries listed below
Sorting:
- Reconstruction of focal amplifications with long reads☆23Updated last month
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆26Updated 8 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- QDNAseq package for Bioconductor☆53Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Simulation toolbox for structural variations.☆10Updated 6 years ago
- Somatic point mutation caller☆32Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- BigWig and BAM utilities☆99Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- SV clustering☆31Updated 4 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆20Updated 6 months ago
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆17Updated 2 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆51Updated 6 years ago
- ☆18Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago