visanuwan / cresilLinks
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
☆12Updated 5 months ago
Alternatives and similar repositories for cresil
Users that are interested in cresil are comparing it to the libraries listed below
Sorting:
- Reconstruction of focal amplifications with long reads☆23Updated 3 months ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆27Updated 9 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆51Updated 6 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 8 months ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆38Updated 2 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Somatic point mutation caller☆33Updated last month
- Tools for analyzing DNA methylation data☆44Updated last month
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Evolutionary Transcriptomics with R☆47Updated this week
- BigWig and BAM utilities☆102Updated last year