CompEpigen / methylbert
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
☆21Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for methylbert
- Computational Optimization of DNA Activity (CODA)☆41Updated 2 months ago
- RNA-seq prediction with deep convolutional neural networks.☆89Updated last month
- ☆67Updated last year
- ☆61Updated 4 months ago
- ☆17Updated 2 weeks ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆54Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆27Updated this week
- ☆16Updated 8 months ago
- Knowledge-primed neural networks☆34Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆65Updated last week
- code to run sei and obtain sei and sequence class predictions☆92Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆90Updated 2 weeks ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆31Updated this week
- Pipeline for efficient genomic data processing.☆20Updated 2 months ago
- ☆22Updated 7 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆58Updated 4 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆29Updated last month
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆62Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆43Updated last year
- Species-aware DNA language modeling☆17Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆38Updated last month
- Predicting gene expression levels from genomic sequences☆50Updated 4 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 8 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Predictor of TCR-epitope interactions☆18Updated 2 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆19Updated last month
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆40Updated 3 weeks ago
- ☆16Updated 6 months ago