A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
☆45Mar 12, 2025Updated last year
Alternatives and similar repositories for methylbert
Users that are interested in methylbert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14May 2, 2025Updated last year
- CpGPT: a Foundation Model for DNA Methylation.☆76Dec 28, 2025Updated 6 months ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆21Feb 16, 2026Updated 4 months ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Modular framework for deep learning predictions on methylation data.☆59Jun 2, 2020Updated 6 years ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆62Mar 5, 2026Updated 3 months ago
- ☆18Feb 15, 2024Updated 2 years ago
- ☆14Jul 9, 2023Updated 2 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆12Nov 7, 2024Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆19Dec 16, 2025Updated 6 months ago
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 13, 2024Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆193Apr 19, 2026Updated 2 months ago
- Decomposition of heterogeneous DNA methylomes☆24Jul 10, 2024Updated last year
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13May 8, 2026Updated last month
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- ☆20Jun 23, 2021Updated 5 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92May 11, 2026Updated last month
- ☆12Nov 9, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BISulfite-seq CUI Toolkit☆26Jun 24, 2026Updated last week
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆13Aug 21, 2025Updated 10 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆110May 30, 2026Updated last month
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 9 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 10 months ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated last year
- Godot dedicated Multiplayer Project. Check readme.md for more details☆11Aug 10, 2022Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections, ICLR 2024☆14May 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆125Dec 10, 2025Updated 6 months ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Mar 19, 2026Updated 3 months ago
- ☆51Mar 22, 2026Updated 3 months ago
- ☆19Jun 11, 2026Updated 3 weeks ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago