CompEpigen / methylbert
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
☆30Updated 2 months ago
Alternatives and similar repositories for methylbert
Users that are interested in methylbert are comparing it to the libraries listed below
Sorting:
- Computational Optimization of DNA Activity (CODA)☆58Updated last month
- code to run sei and obtain sei and sequence class predictions☆102Updated 2 years ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆25Updated 5 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆42Updated 5 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆54Updated 6 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆51Updated last month
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆65Updated 2 years ago
- ☆23Updated 8 months ago
- ☆28Updated 3 months ago
- A list of positions (mostly biology-related) open to apply☆35Updated 3 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 10 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆36Updated 2 weeks ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆69Updated 3 weeks ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆48Updated 3 weeks ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- ☆20Updated 3 months ago
- ☆18Updated last year
- ☆19Updated 10 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 2 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 3 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆34Updated 2 weeks ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- ☆65Updated 2 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆54Updated this week