CompEpigen / methylbertLinks
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
☆39Updated 8 months ago
Alternatives and similar repositories for methylbert
Users that are interested in methylbert are comparing it to the libraries listed below
Sorting:
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆99Updated 8 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- CpGPT: a Foundation Model for DNA Methylation.☆60Updated 2 months ago
- ☆33Updated 9 months ago
- ☆80Updated 4 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆42Updated last month
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆84Updated last week
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆31Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆31Updated 4 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆81Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆93Updated 8 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆233Updated last month
- Biological sequence analysis for the modern age.☆258Updated 3 weeks ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Alternative splicing resource☆57Updated 7 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 11 months ago
- coding exercise using TCGA immune infiltration data☆46Updated last year
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆101Updated 3 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆106Updated 3 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 9 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆189Updated 2 months ago