CompEpigen / methylbert
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
☆25Updated this week
Alternatives and similar repositories for methylbert:
Users that are interested in methylbert are comparing it to the libraries listed below
- ☆27Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆38Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- ☆31Updated 2 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated last month
- code to run sei and obtain sei and sequence class predictions☆98Updated 2 years ago
- ☆65Updated 2 weeks ago
- deep learning-inspired explainable sequence model for transcription initiation☆93Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆40Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆72Updated 8 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆67Updated 3 months ago
- ☆18Updated 11 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆57Updated last year
- Dataloader for applying sequence models to personalized genomics☆22Updated this week
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆67Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 3 weeks ago
- Knowledge-primed neural networks☆35Updated last year
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆20Updated 3 months ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆36Updated 5 months ago
- RNA-seq prediction with deep convolutional neural networks.☆131Updated 3 months ago
- ☆19Updated 6 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 9 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆28Updated 2 months ago
- Predictor of TCR-epitope interactions☆24Updated last month
- ☆71Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆37Updated last week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆55Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated last week