Tandem repeat expansion detection or genotyping from long-read alignments
☆173Mar 25, 2026Updated 6 months ago
Alternatives and similar repositories for straglr
Users that are interested in straglr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆275Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆90Sep 9, 2026Updated last month
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- ☆133Updated this week
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tandem repeat genotyping with long reads☆40Sep 23, 2025Updated last year
- Tandem repeat genotyping from long reads☆28Sep 21, 2026Updated 2 weeks ago
- Evaluating genome assemblies☆127Mar 3, 2026Updated 7 months ago
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆392Oct 1, 2026Updated last week
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆22Sep 15, 2026Updated 3 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆170Sep 15, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Read-based phasing of genomic variants, also called haplotype assembly☆430Sep 24, 2026Updated 2 weeks ago
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- a long read simulator that can imitate many types of read problems☆306Jul 24, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- Comparison of multiple long read datasets☆182Aug 3, 2026Updated 2 months ago
- quality filtering tool for long reads☆419Sep 17, 2025Updated last year
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆191Jul 21, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Long read based human genomic structural variation detection with cuteSV☆295Sep 24, 2026Updated 2 weeks ago
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- De novo construction of isoforms from long-read data☆47Sep 9, 2026Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 7 months ago
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- ☆119Sep 25, 2026Updated 2 weeks ago
- Structural variant toolkit for VCFs☆424Updated this week
- A bioinformatics tool for working with modified bases☆277Jul 14, 2026Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆139Nov 4, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated last month
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Plotting scripts for long read sequencing data☆561Oct 1, 2026Updated last week
- Tools for plotting methylation data in various ways☆199Sep 17, 2026Updated 3 weeks ago