farhangus / Sniffles2_plotLinks
☆30Updated 9 months ago
Alternatives and similar repositories for Sniffles2_plot
Users that are interested in Sniffles2_plot are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆34Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆34Updated last year
- SV calling for diploid assemblies☆27Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆30Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- ☆42Updated last year
- Detection and genotyping of structural variants☆18Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 7 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated 11 months ago
- ☆29Updated 5 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- SV genotyping with long reads☆39Updated last year
- ☆76Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- ☆80Updated 3 months ago