farhangus / Sniffles2_plot
☆29Updated 6 months ago
Alternatives and similar repositories for Sniffles2_plot:
Users that are interested in Sniffles2_plot are comparing it to the libraries listed below
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- SV calling for diploid assemblies☆26Updated 11 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆34Updated 11 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆30Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆42Updated 10 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆33Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 8 months ago
- ☆35Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆22Updated 8 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆28Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- ☆29Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago