☆33Aug 18, 2024Updated last year
Alternatives and similar repositories for Sniffles2_plot
Users that are interested in Sniffles2_plot are comparing it to the libraries listed below
Sorting:
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆47Feb 4, 2026Updated 3 weeks ago
- ☆11May 2, 2025Updated 9 months ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆180Dec 1, 2023Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Jan 23, 2026Updated last month
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Dec 5, 2025Updated 2 months ago
- A simple script to create a customizable html file from an AnnotSV output.☆20May 3, 2024Updated last year
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Dec 6, 2024Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Structural variation caller using third generation sequencing☆636Dec 18, 2025Updated 2 months ago
- Show pangenome graphs in an easy way☆58Aug 7, 2025Updated 6 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆29Aug 15, 2024Updated last year
- Structural variant caller for real-time long-read sequencing data☆61Dec 1, 2022Updated 3 years ago
- Powerful statistics for VCF files☆73Nov 16, 2025Updated 3 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆80Jun 25, 2025Updated 8 months ago
- Toolset for SV simulation, comparison and filtering☆411Dec 1, 2023Updated 2 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 5 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- ☆34Aug 8, 2025Updated 6 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆176Apr 12, 2024Updated last year