A Generative Pre-Trained Transformer Package for Pangenomes
☆53May 19, 2025Updated last year
Alternatives and similar repositories for panGPT
Users that are interested in panGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Yet another LLM command line interface☆16Dec 9, 2024Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆55Mar 7, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last month
- plane sweep filtering genome alignments☆24May 23, 2026Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- ☆101Apr 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- ☆23Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 3 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated last month
- ☆13May 27, 2025Updated last year
- implicit pangenome graph☆108Updated this week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- General purpose utility related to GAF files☆29May 20, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 4 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆81May 6, 2026Updated last month
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year