A Generative Pre-Trained Transformer Package for Pangenomes
☆53May 19, 2025Updated last year
Alternatives and similar repositories for panGPT
Users that are interested in panGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Yet another LLM command line interface☆16Dec 9, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- A novel method for sequence similarity estimation☆27Mar 23, 2024Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- implicit pangenome graph☆114Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13May 27, 2025Updated last year
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated 2 weeks ago
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 2 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year