mol-evol / panGPTLinks
A Generative Pre-Trained Transformer Package for Pangenomes
☆53Updated 8 months ago
Alternatives and similar repositories for panGPT
Users that are interested in panGPT are comparing it to the libraries listed below
Sorting:
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- fastest GTF/GFF-to-BED converter chilling around☆29Updated 2 weeks ago
- Convert genbank files to a swath of other formats☆24Updated 2 weeks ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- A tool for simulating random mutations in any genome☆43Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- ☆19Updated 2 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- ☆45Updated 2 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated 3 weeks ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 7 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 2 weeks ago
- Find Unique genomic Regions☆32Updated last week
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ☆17Updated 2 years ago
- ☆17Updated 2 months ago
- ☆14Updated 7 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated last month
- Python3 module for running MUMmer and reading the output☆33Updated 9 months ago