A novel method for sequence similarity estimation
☆28Mar 23, 2024Updated 2 years ago
Alternatives and similar repositories for LexicHash
Users that are interested in LexicHash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- k-mers and the like☆22Updated this week
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 3 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated 2 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- ☆19Feb 15, 2025Updated last year
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 7 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated 10 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 6 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated 10 months ago
- Split k-mer analysis – version 2☆105Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- NCBI taxonomy tree in-memory mapping☆18Oct 20, 2022Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆18Dec 26, 2025Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago