gcgreenberg / LexicHashLinks
A novel method for sequence similarity estimation
☆28Updated last year
Alternatives and similar repositories for LexicHash
Users that are interested in LexicHash are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆28Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 9 months ago
- Genome size estimation from long read overlaps☆59Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- Differential k-mer analysis☆36Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆22Updated 7 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- ☆44Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- Fast viral consensus genome reconstruction☆23Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Better Alignments with Translated HMMER☆21Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 6 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Remove human reads from a sequencing run☆40Updated 3 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year