A novel method for sequence similarity estimation
☆27Mar 23, 2024Updated 2 years ago
Alternatives and similar repositories for LexicHash
Users that are interested in LexicHash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementations of syncmer-based long read mappers☆10Mar 8, 2024Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 3 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆49Sep 18, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 3 months ago
- Colinear block visualisation tool☆32Jan 17, 2024Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆47Jul 16, 2026Updated 3 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- ☆11Dec 18, 2025Updated 10 months ago
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)☆15Feb 2, 2025Updated last year
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to aid virus sequencing and accelerate IRMA.☆13Oct 22, 2026Updated last week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated last year
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆211Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- ☆21Feb 15, 2025Updated last year