software to identify primers that can distinguish genomes
☆20Jan 23, 2026Updated 6 months ago
Alternatives and similar repositories for primerForge
Users that are interested in primerForge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated last month
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆15Jul 24, 2026Updated 3 weeks ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 weeks ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- k-mers and the like☆23Updated this week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Updated this week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated 2 months ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- ☆10Jun 9, 2025Updated last year
- whole genome MLST analysis☆55Jun 17, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆36Updated this week
- 🧬 Unique (& conserved) DNA sequence identification☆20Jun 4, 2026Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 2 months ago
- A Python package to update the MLST database for the mlst tool.☆29Jul 22, 2026Updated 3 weeks ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆54Mar 23, 2026Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Aug 3, 2026Updated last week
- Recombination-free trees☆72Jul 24, 2026Updated 3 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆41Apr 6, 2026Updated 4 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆42Apr 17, 2024Updated 2 years ago