SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
☆39Mar 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for sv-analysis
Users that are interested in sv-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 3 weeks ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 8 months ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆20Mar 24, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆136Dec 8, 2025Updated 4 months ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 8 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 2 months ago
- ☆44Sep 10, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tandem repeat expansion detection or genotyping from long-read alignments☆151Mar 25, 2026Updated 3 weeks ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 4 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 3 months ago
- VNTR annotation using motif selection☆42Mar 17, 2026Updated last month
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated last week
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 2 months ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆168Apr 9, 2026Updated last week
- vembrane filters VCF records using python expressions☆69Apr 10, 2026Updated last week
- ☆154Apr 10, 2026Updated last week
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 10 months ago
- ☆20Nov 17, 2025Updated 5 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆284Mar 26, 2026Updated 3 weeks ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated last year
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- ☆23Sep 9, 2025Updated 7 months ago