1kg-ont-vienna / sv-analysis
SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
☆25Updated 2 months ago
Alternatives and similar repositories for sv-analysis:
Users that are interested in sv-analysis are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- SV calling for diploid assemblies☆26Updated 11 months ago
- ☆16Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- Tandem repeat genotyping with long reads☆28Updated last month
- De novo tandem repeat calling from PacBio HiFi data☆15Updated last month
- A VCF comparison engine for structual variant benchmarking☆19Updated 11 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 8 months ago
- SV genotyping with long reads☆40Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last month
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 weeks ago
- Structural variant benchmark☆17Updated last week
- ☆48Updated 8 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 3 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Population-wide Deletion Calling☆35Updated 6 months ago
- ☆29Updated 6 months ago
- ☆29Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago