Alternatives and similar repositories for sv-analysis

Users that are interested in sv-analysis are comparing it to the libraries listed below

• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆38Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆63Updated last week
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆46Updated last month
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆43Updated last month
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated last week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 7 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆22Updated last year
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆18Updated 7 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆49Updated 7 months ago
• MeHelmy / princess
  ☆81Updated 7 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated 11 months ago
• hitbc / gcSV
  ☆21Updated 7 months ago
• UCSC-nanopore-cgl / margin
  ☆34Updated 2 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆38Updated last month
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• WGLab / LongReadSum
  ☆24Updated last month
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆44Updated last month
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 4 years ago