1kg-ont-vienna / sv-analysisLinks
SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
☆37Updated 5 months ago
Alternatives and similar repositories for sv-analysis
Users that are interested in sv-analysis are comparing it to the libraries listed below
Sorting:
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆49Updated last year
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- Kmer Analysis of Pileups for Genotyping☆32Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Working space for the GIAB TR benchmarking project☆22Updated last year
- Structural variant benchmark☆18Updated 7 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- ☆81Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated 11 months ago
- ☆21Updated 7 months ago
- ☆34Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Structural variant caller☆55Updated 3 years ago
- VNTR annotation using motif selection☆38Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- ☆24Updated last month
- Easy genomic regions for short-read variant calling☆44Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago