gregorykucherov / mrepsLinks
mreps: software for tandem repeat identification in DNA
☆15Updated 5 years ago
Alternatives and similar repositories for mreps
Users that are interested in mreps are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- ☆12Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Variant call adjudication☆16Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- k-mer similarity analysis pipeline☆23Updated 3 months ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆12Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆14Updated 2 years ago
- ☆13Updated 8 years ago
- ☆13Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year