gregorykucherov / mrepsLinks
mreps: software for tandem repeat identification in DNA
☆15Updated 5 years ago
Alternatives and similar repositories for mreps
Users that are interested in mreps are comparing it to the libraries listed below
Sorting:
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- reference free variant assembly☆33Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated last week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 9 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆14Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ☆12Updated 3 years ago
- k-mer similarity analysis pipeline☆22Updated last month
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆12Updated 6 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- ☆12Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- Variant call adjudication☆16Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Simulate mutations in genomes☆15Updated 5 years ago