gregorykucherov / mrepsLinks
mreps: software for tandem repeat identification in DNA
☆15Updated 6 years ago
Alternatives and similar repositories for mreps
Users that are interested in mreps are comparing it to the libraries listed below
Sorting:
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- ☆12Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 6 years ago
- ☆14Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Variant call adjudication☆16Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆16Updated 10 months ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- k-mer similarity analysis pipeline☆23Updated 3 weeks ago
- reference free variant assembly☆34Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- ☆13Updated 3 years ago