aertslab / SCopeLinks
Fast visualization tool for large-scale and high dimensional single-cell data
☆77Updated 3 weeks ago
Alternatives and similar repositories for SCope
Users that are interested in SCope are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- ☆69Updated 7 years ago
- ☆59Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 2 weeks ago
- ☆71Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆62Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Tools for single-cell data processing☆130Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Visualization of scRNA-seq data.☆99Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆34Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 2 months ago
- ☆120Updated 2 years ago
- Simplify functional enrichment results☆121Updated last year
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago