aertslab / SCopeLinks
Fast visualization tool for large-scale and high dimensional single-cell data
☆74Updated 2 years ago
Alternatives and similar repositories for SCope
Users that are interested in SCope are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- ☆69Updated 7 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆93Updated 3 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- ☆70Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Visualization of scRNA-seq data.☆99Updated 2 years ago
- ☆62Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆67Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- ☆58Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ☆34Updated 6 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Doublet detection in single-cell RNA-seq data.☆93Updated 8 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 9 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- A docker image for single-cell analysis☆94Updated this week
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago